VTR

9 main matches found (31 matches in total )

Execution time: 10.0 seconds

Match RMSD = 0.41

VTR = 0.01

Average AVD = 0.39 Å

Parameters

Chains(7NXB.pdb ): E versus B

Chains(7NXB_africa_mut.pdb ) E versus B

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7NXB 1050 22 0 7 0 1 1 31
B7NXB_africa_mut 1050 26 0 7 0 1 1 35

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
E-B E-B Y505 P30 Y505 P30 Hydrophobic Hydrophobic 0.25 View
E-B E-B Y505 Y33 Y505 Y33 Hydrophobic Hydrophobic 0.4 View
E-B E-B Y501 P30 Y501 P30 Hydrophobic Hydrophobic 0.36 View
E-B E-B R403 D93 R403 D93 Hydrogen Bonds Hydrogen Bonds 0.63 View
E-B E-B Y505 P30 Y505 P30 Hydrophobic Hydrophobic 0.29 View
E-B E-B R403 D93 R403 D93 Hydrogen Bonds Hydrogen Bonds 0.44 View
E-B E-B Y501 P30 Y501 P30 Hydrophobic Hydrophobic 0.41 View
E-B E-B Y501 P30 Y501 P30 Hydrophobic Hydrophobic 0.39 View
E-B E-B Y501 P30 Y501 P30 Hydrophobic Hydrophobic 0.38 View
E-B E-B Y505 V2 Y505 V2 Hydrophobic Hydrophobic 0.31 View
E-B E-B Y505 Y33 Y505 Y33 Aromatic Stacking Aromatic Stacking 0.38 View
E-B E-B D405 T94 D405 T94 Hydrophobic Hydrophobic 0.72 View
E-B E-B Y501 P30 Y501 P30 Hydrophobic Hydrophobic 0.12 View
E-B E-B Y505 Y33 Y505 Y33 Hydrophobic Hydrophobic 0.4 View
E-B E-B T500 S28 T500 S28 Hydrogen Bonds Hydrogen Bonds 0.5 View
E-B E-B R403 Y33 R403 Y33 Hydrogen Bonds Hydrogen Bonds 0.45 View
E-B E-B Y505 Y33 Y505 Y33 Hydrophobic Hydrophobic 0.41 View
E-B E-B Y501 P30 Y501 P30 Hydrophobic Hydrophobic 0.41 View
E-B E-B Y505 P30 Y505 P30 Hydrophobic Hydrophobic 0.26 View
E-B E-B D405 D93 D405 D93 Repulsive Repulsive 0.3 View
E-B E-B Y505 V29 Y505 V29 Hydrophobic Hydrophobic 0.28 View
E-B E-B Y505 D93 Y505 D93 Hydrogen Bonds Hydrogen Bonds 0.43 View
E-B E-B Y501 P30 Y501 P30 Hydrophobic Hydrophobic 0.41 View
E-B E-B Y505 P30 Y505 P30 Hydrophobic Hydrophobic 0.26 View
E-B E-B Y505 Y92 Y505 Y92 Hydrogen Bonds Hydrogen Bonds 0.69 View
E-B E-B Y505 Y33 Y505 Y33 Hydrophobic Hydrophobic 0.4 View
E-B E-B Y505 V29 Y505 V29 Hydrophobic Hydrophobic 0.34 View
E-B E-B G502 S28 G502 S28 Hydrogen Bonds Hydrogen Bonds 0.32 View
E-B E-B Y505 Y33 Y505 Y33 Hydrophobic Hydrophobic 0.41 View
E-B E-B Y505 P30 Y505 P30 Hydrophobic Hydrophobic 0.3 View
E-B E-B Y501 P30 Y501 P30 Hydrophobic Hydrophobic 0.44 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7NXB | 7NXB_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7NXB_africa_mut E-B Y501 P30 Hydrophobic 3.98 View
7NXB_africa_mut E-B Y505 Y33 Hydrophobic 4.29 View
7NXB_africa_mut E-B Y505 Y33 Hydrophobic 4.24 View
7NXB_africa_mut E-B Y505 Y33 Hydrophobic 4.26 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph