VTR

13 main matches found (42 matches in total )

Execution time: 14.0 seconds

Match RMSD = 0.34

VTR = 0.01

Average AVD = 0.33 Å

Parameters

Chains(7NX8.pdb ): E versus H

Chains(7NX8_africa_mut.pdb ) E versus H

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7NX8 1049 29 2 10 0 0 1 42
B7NX8_africa_mut 1049 33 2 14 0 0 1 50

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
H-E H-E N57 N370 N57 N370 Hydrogen Bonds Hydrogen Bonds 0.29 View
H-E H-E Y59 F377 Y59 F377 Hydrophobic Hydrophobic 0.35 View
H-E H-E Y59 F377 Y59 F377 Hydrophobic Hydrophobic 0.41 View
H-E H-E D33 T385 D33 T385 Hydrogen Bonds Hydrogen Bonds 0.49 View
H-E H-E S56 N370 S56 N370 Hydrogen Bonds Hydrogen Bonds 0.34 View
H-E H-E Y59 F377 Y59 F377 Hydrophobic Hydrophobic 0.27 View
H-E H-E Y59 P384 Y59 P384 Hydrophobic Hydrophobic 0.41 View
H-E H-E W104 L390 W104 L390 Hydrophobic Hydrophobic 0.24 View
H-E H-E W104 L390 W104 L390 Hydrophobic Hydrophobic 0.3 View
H-E H-E W104 L390 W104 L390 Hydrophobic Hydrophobic 0.37 View
H-E H-E Y59 T385 Y59 T385 Hydrophobic Hydrophobic 0.3 View
H-E H-E Y59 P384 Y59 P384 Hydrophobic Hydrophobic 0.14 View
H-E H-E W104 L390 W104 L390 Hydrophobic Hydrophobic 0.36 View
H-E H-E W104 L390 W104 L390 Hydrophobic Hydrophobic 0.31 View
H-E H-E D33 T385 D33 T385 Hydrogen Bonds Hydrogen Bonds 0.49 View
H-E H-E W104 L390 W104 L390 Hydrophobic Hydrophobic 0.21 View
H-E H-E W104 V382 W104 V382 Hydrophobic Hydrophobic 0.31 View
H-E H-E Y106 S383 Y106 S383 Hydrogen Bonds Hydrogen Bonds 0.12 View
H-E H-E N57 S366 N57 S366 Hydrogen Bonds Hydrogen Bonds 0.28 View
H-E H-E W104 F392 W104 F392 Hydrophobic Hydrophobic 0.29 View
H-E H-E W104 L390 W104 L390 Hydrophobic Hydrophobic 0.3 View
H-E H-E Y59 F377 Y59 F377 Aromatic Stacking Aromatic Stacking 0.24 View
H-E H-E Y59 F377 Y59 F377 Hydrophobic Hydrophobic 0.4 View
H-E H-E Y106 T385 Y106 T385 Hydrogen Bonds Hydrogen Bonds 0.48 View
H-E H-E D62 K378 D62 K378 Attractive Attractive 0.35 View
H-E H-E W104 L517 W104 L517 Hydrophobic Hydrophobic 0.39 View
H-E H-E W104 L390 W104 L390 Hydrophobic Hydrophobic 0.33 View
H-E H-E W104 V382 W104 V382 Hydrophobic Hydrophobic 0.37 View
H-E H-E W104 S383 W104 S383 Hydrogen Bonds Hydrogen Bonds 0.36 View
H-E H-E W104 L390 W104 L390 Hydrophobic Hydrophobic 0.26 View
H-E H-E W104 S383 W104 S383 Hydrogen Bonds Hydrogen Bonds 0.34 View
H-E H-E N57 T385 N57 T385 Hydrophobic Hydrophobic 0.36 View
H-E H-E W104 L390 W104 L390 Hydrophobic Hydrophobic 0.22 View
H-E H-E Y59 F377 Y59 F377 Hydrophobic Hydrophobic 0.45 View
H-E H-E Y59 P384 Y59 P384 Hydrophobic Hydrophobic 0.31 View
H-E H-E W104 L390 W104 L390 Hydrophobic Hydrophobic 0.38 View
H-E H-E W104 L517 W104 L517 Hydrophobic Hydrophobic 0.35 View
H-E H-E Y59 F377 Y59 F377 Hydrophobic Hydrophobic 0.41 View
H-E H-E K65 F374 K65 F374 Hydrogen Bonds Hydrogen Bonds 0.22 View
H-E H-E Y59 P384 Y59 P384 Hydrophobic Hydrophobic 0.3 View
H-E H-E W104 F392 W104 F392 Hydrophobic Hydrophobic 0.28 View
H-E H-E D62 K378 D62 K378 Attractive Attractive 0.32 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7NX8 | 7NX8_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7NX8_africa_mut H-E Y59 F377 Hydrophobic 4.34 View
7NX8_africa_mut H-E K65 S375 Hydrogen Bonds 3.26 View
7NX8_africa_mut H-E G101 K386 Hydrogen Bonds 3.63 View
7NX8_africa_mut H-E W104 V382 Hydrophobic 4.40 View
7NX8_africa_mut H-E W104 K386 Hydrophobic 4.44 View
7NX8_africa_mut H-E W104 L390 Hydrophobic 4.37 View
7NX8_africa_mut H-E Y106 S383 Hydrogen Bonds 3.86 View
7NX8_africa_mut H-E Y106 T385 Hydrogen Bonds 3.70 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph