VTR

29 main matches found (51 matches in total )

Execution time: 12.0 seconds

Match RMSD = 0.39

VTR = 0.01

Average AVD = 0.36 Å

Parameters

Chains(7NEG.pdb ): E versus H

Chains(7NEG_africa_mut.pdb ) E versus H

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7NEG 614 22 2 27 0 3 1 55
B7NEG_africa_mut 614 25 0 28 0 3 1 57

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
H-E H-E V2 F486 V2 F486 Hydrophobic Hydrophobic 0.39 View
H-E H-E R97 Y489 R97 Y489 Hydrogen Bonds Hydrogen Bonds 0.11 View
H-E H-E G26 N487 G26 N487 Hydrogen Bonds Hydrogen Bonds 0.54 View
H-E H-E R71 K458 R71 K458 Repulsive Repulsive 0.27 View
H-E H-E R97 Y489 R97 Y489 Hydrogen Bonds Hydrogen Bonds 0.13 View
H-E H-E G54 Y421 G54 Y421 Hydrogen Bonds Hydrogen Bonds 0.26 View
H-E H-E R71 K458 R71 K458 Repulsive Repulsive 0.25 View
H-E H-E T28 A475 T28 A475 Hydrogen Bonds Hydrogen Bonds 0.59 View
H-E H-E S53 Y421 S53 Y421 Hydrogen Bonds Hydrogen Bonds 0.24 View
H-E H-E S53 Y473 S53 Y473 Hydrogen Bonds Hydrogen Bonds 0.29 View
H-E H-E F99 Y489 F99 Y489 Hydrophobic Hydrophobic 0.26 View
H-E H-E N32 A475 N32 A475 Hydrogen Bonds Hydrogen Bonds 0.67 View
H-E H-E S56 D420 S56 D420 Hydrogen Bonds Hydrogen Bonds 0.35 View
H-E H-E Y100 Q493 Y100 Q493 Hydrophobic Hydrophobic 0.26 View
H-E H-E R71 K458 R71 K458 Repulsive Repulsive 0.24 View
H-E H-E S53 R457 S53 R457 Hydrogen Bonds Hydrogen Bonds 0.18 View
H-E H-E Y33 F456 Y33 F456 Hydrophobic Hydrophobic 0.32 View
H-E H-E R97 Y489 R97 Y489 Hydrogen Bonds Hydrogen Bonds 0.19 View
H-E H-E G54 N460 G54 N460 Hydrogen Bonds Hydrogen Bonds 0.28 View
H-E H-E S53 K458 S53 K458 Hydrogen Bonds Hydrogen Bonds 0.33 View
H-E H-E R97 N487 R97 N487 Hydrogen Bonds Hydrogen Bonds 0.25 View
H-E H-E I106 F486 I106 F486 Hydrophobic Hydrophobic 0.46 View
H-E H-E S56 D420 S56 D420 Hydrogen Bonds Hydrogen Bonds 0.34 View
H-E H-E Y52 Y421 Y52 Y421 Hydrophobic Hydrophobic 0.73 View
H-E H-E S53 K458 S53 K458 Hydrogen Bonds Hydrogen Bonds 0.2 View
H-E H-E I106 F486 I106 F486 Hydrophobic Hydrophobic 0.33 View
H-E H-E Y33 L455 Y33 L455 Hydrogen Bonds Hydrogen Bonds 0.46 View
H-E H-E G54 K458 G54 K458 Hydrogen Bonds Hydrogen Bonds 0.22 View
H-E H-E R31 Y473 R31 Y473 Hydrogen Bonds Hydrogen Bonds 0.66 View
H-E H-E V2 F486 V2 F486 Hydrophobic Hydrophobic 0.51 View
H-E H-E R31 K458 R31 K458 Hydrophobic Hydrophobic 0.21 View
H-E H-E Y33 F456 Y33 F456 Aromatic Stacking Aromatic Stacking 0.28 View
H-E H-E R31 Q474 R31 Q474 Hydrogen Bonds Hydrogen Bonds 0.23 View
H-E H-E Y33 L455 Y33 L455 Hydrophobic Hydrophobic 0.22 View
H-E H-E V2 F486 V2 F486 Hydrophobic Hydrophobic 0.51 View
H-E H-E T28 S477 T28 S477 Hydrogen Bonds Hydrogen Bonds 0.35 View
H-E H-E V2 F486 V2 F486 Hydrophobic Hydrophobic 0.49 View
H-E H-E R97 N487 R97 N487 Hydrogen Bonds Hydrogen Bonds 0.19 View
H-E H-E Y33 F456 Y33 F456 Hydrophobic Hydrophobic 0.32 View
H-E H-E E101 L455 E101 L455 Hydrophobic Hydrophobic 0.19 View
H-E H-E S53 Y421 S53 Y421 Hydrogen Bonds Hydrogen Bonds 0.25 View
H-E H-E Y52 Y421 Y52 Y421 Hydrophobic Hydrophobic 0.8 View
H-E H-E E101 Y453 E101 Y453 Hydrogen Bonds Hydrogen Bonds 0.27 View
H-E H-E I106 F486 I106 F486 Hydrophobic Hydrophobic 0.38 View
H-E H-E F99 Y489 F99 Y489 Hydrophobic Hydrophobic 0.37 View
H-E H-E E101 L455 E101 L455 Hydrophobic Hydrophobic 0.41 View
H-E H-E N30 K458 N30 K458 Hydrogen Bonds Hydrogen Bonds 0.76 View
H-E H-E F99 Y489 F99 Y489 Hydrophobic Hydrophobic 0.46 View
H-E H-E Y100 L455 Y100 L455 Hydrophobic Hydrophobic 0.42 View
H-E H-E V2 F486 V2 F486 Hydrophobic Hydrophobic 0.49 View
H-E H-E Y33 F456 Y33 F456 Hydrophobic Hydrophobic 0.33 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7NEG | 7NEG_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7NEG H-E E101 K417 Attractive, Hydrogen Bonds 2.86 View
7NEG H-E E101 K417 Attractive, Hydrogen Bonds 2.67 View
7NEG_africa_mut H-E T28 A475 Hydrogen Bonds 3.67 View
7NEG_africa_mut H-E R31 Y473 Hydrophobic 4.32 View
7NEG_africa_mut H-E R31 Q474 Hydrogen Bonds 3.74 View
7NEG_africa_mut H-E Y33 N417 Hydrogen Bonds 2.79 View
7NEG_africa_mut H-E Y52 N417 Hydrophobic 4.19 View
7NEG_africa_mut H-E F99 Y489 Hydrophobic 4.33 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph