Execution time: 27.0 seconds
Match RMSD = 0.53
VTR = 0.01
Average AVD = 0.49 Å
Chains(7NDD.pdb ): B versus H
Chains(7NDD_africa_mut.pdb ) B versus H
Cutoff: 2 Å
Detection of structural contacts in α-helices OFF
Contacts found | Number of residues | Hydrophobic | Attractive | Hydrogen Bonds | Disulphide Bonds | Repulsive | Aromatic Stacking | Total |
---|---|---|---|---|---|---|---|---|
A7NDD | 3852 | 0 | 3 | 4 | 0 | 0 | 1 | 8 |
B7NDD_africa_mut | 3843 | 1 | 3 | 5 | 0 | 0 | 1 | 10 |
(Conservatives hydrophobic matches are hidden by default)
Chains | Residues | Contact types | |||||||
---|---|---|---|---|---|---|---|---|---|
A | B | A1 | A2 | B1 | B2 | A [1-2] | B [1-2] | AVD | Contact |
B-H | B-H | H146 | D54 | H146 | D54 | Attractive | Attractive | 0.61 | View |
B-H | B-H | D253 | Y108 | D253 | Y108 | Hydrogen Bonds | Hydrogen Bonds | 0.73 | View |
B-H | B-H | Q14 | Y32 | Q14 | Y32 | Hydrogen Bonds | Hydrogen Bonds | 0.47 | View |
B-H | B-H | Y144 | Y53 | Y144 | Y53 | Aromatic Stacking | Aromatic Stacking | 0.19 | View |
B-H | B-H | Y144 | Y53 | Y144 | Y53 | Hydrogen Bonds | Hydrogen Bonds | 0.32 | View |
B-H | B-H | H146 | D54 | H146 | D54 | Attractive | Attractive | 0.23 | View |
B-H | B-H | K147 | N57 | K147 | N57 | Hydrogen Bonds | Hydrogen Bonds | 0.76 | View |
B-H | B-H | H146 | D54 | H146 | D54 | Attractive | Attractive | 0.57 | View |
Residue Match Frequency | View |
---|---|
GLU | |
ALA | |
TYR | |
THR | |
LEU | |
SER | |
PHE | |
GLY | |
MET | |
PRO | |
LYS | |
VAL | |
HIS | |
ILE | |
CYS | |
ARG | |
GLN | |
ASP | |
ASN | |
TRP |