Execution time: 27.0 seconds
Match RMSD = 0.51
VTR = 0.02
Average AVD = 0.46 Å
Chains(7NDD.pdb ): A versus F
Chains(7NDD_africa_mut.pdb ) A versus F
Cutoff: 2 Å
Detection of structural contacts in α-helices OFF
Contacts found | Number of residues | Hydrophobic | Attractive | Hydrogen Bonds | Disulphide Bonds | Repulsive | Aromatic Stacking | Total |
---|---|---|---|---|---|---|---|---|
A7NDD | 3852 | 2 | 3 | 5 | 0 | 0 | 1 | 11 |
B7NDD_africa_mut | 3843 | 5 | 3 | 6 | 0 | 0 | 1 | 15 |
(Conservatives hydrophobic matches are hidden by default)
Chains | Residues | Contact types | |||||||
---|---|---|---|---|---|---|---|---|---|
A | B | A1 | A2 | B1 | B2 | A [1-2] | B [1-2] | AVD | Contact |
A-F | A-F | H146 | D54 | H146 | D54 | Attractive | Attractive | 0.3 | View |
A-F | A-F | H146 | D54 | H146 | D54 | Attractive | Attractive | 0.56 | View |
A-F | A-F | Y144 | Y53 | Y144 | Y53 | Hydrophobic | Hydrophobic | 0.25 | View |
A-F | A-F | D253 | Y108 | D253 | Y108 | Hydrogen Bonds | Hydrogen Bonds | 0.72 | View |
A-F | A-F | Q14 | Y32 | Q14 | Y32 | Hydrogen Bonds | Hydrogen Bonds | 0.75 | View |
A-F | A-F | Y144 | Y53 | Y144 | Y53 | Aromatic Stacking | Aromatic Stacking | 0.18 | View |
A-F | A-F | K147 | N57 | K147 | N57 | Hydrogen Bonds | Hydrogen Bonds | 0.8 | View |
A-F | A-F | Y145 | Y53 | Y145 | Y53 | Hydrogen Bonds | Hydrogen Bonds | 0.31 | View |
A-F | A-F | Q14 | Y32 | Q14 | Y32 | Hydrophobic | Hydrophobic | 0.35 | View |
A-F | A-F | H146 | D54 | H146 | D54 | Attractive | Attractive | 0.55 | View |
A-F | A-F | K147 | G56 | K147 | G56 | Hydrogen Bonds | Hydrogen Bonds | 0.32 | View |
Residue Match Frequency | View |
---|---|
GLU | |
ALA | |
TYR | |
THR | |
LEU | |
SER | |
PHE | |
GLY | |
MET | |
PRO | |
LYS | |
VAL | |
HIS | |
ILE | |
CYS | |
ARG | |
GLN | |
ASP | |
ASN | |
TRP |