VTR
9 main matches found
(10 matches in total )Execution time: 26.0 seconds
Match RMSD = 0.5
VTR = 0.02
Average AVD = 0.46 Å
Parameters
Chains(7NDC.pdb ): A versus F
Chains(7NDC_africa_mut.pdb ) A versus F
Cutoff: 2 Å
Detection of structural contacts in α-helices OFF
| Contacts found | Number of residues | Hydrophobic | Attractive | Hydrogen Bonds | Disulphide Bonds | Repulsive | Aromatic Stacking | Total |
|---|---|---|---|---|---|---|---|---|
| A7NDC | 3852 | 1 | 3 | 5 | 0 | 0 | 1 | 10 |
| B7NDC_africa_mut | 3843 | 5 | 3 | 6 | 0 | 0 | 1 | 15 |
Matches
(Conservatives hydrophobic matches are hidden by default)
| Chains | Residues | Contact types | |||||||
|---|---|---|---|---|---|---|---|---|---|
| A | B | A1 | A2 | B1 | B2 | A [1-2] | B [1-2] | AVD | Contact |
| A-F | A-F | Q14 | Y32 | Q14 | Y32 | Hydrogen Bonds | Hydrogen Bonds | 0.76 | View |
| A-F | A-F | D253 | Y108 | D253 | Y108 | Hydrogen Bonds | Hydrogen Bonds | 0.53 | View |
| A-F | A-F | K147 | G56 | K147 | G56 | Hydrogen Bonds | Hydrogen Bonds | 0.37 | View |
| A-F | A-F | H146 | D54 | H146 | D54 | Attractive | Attractive | 0.55 | View |
| A-F | A-F | Y144 | Y53 | Y144 | Y53 | Aromatic Stacking | Aromatic Stacking | 0.18 | View |
| A-F | A-F | H146 | D54 | H146 | D54 | Attractive | Attractive | 0.54 | View |
| A-F | A-F | H146 | D54 | H146 | D54 | Attractive | Attractive | 0.29 | View |
| A-F | A-F | Y144 | Y53 | Y144 | Y53 | Hydrophobic | Hydrophobic | 0.24 | View |
| A-F | A-F | Y145 | Y53 | Y145 | Y53 | Hydrogen Bonds | Hydrogen Bonds | 0.31 | View |
| A-F | A-F | K147 | N57 | K147 | N57 | Hydrogen Bonds | Hydrogen Bonds | 0.82 | View |