Execution time: 50.0 seconds
Match RMSD = 0.44
VTR = 0.01
Average AVD = 0.43 Å
Chains(7NDA.pdb ): C versus H
Chains(7NDA_africa_mut.pdb ) C versus H
Cutoff: 2 Å
Detection of structural contacts in α-helices OFF
Contacts found | Number of residues | Hydrophobic | Attractive | Hydrogen Bonds | Disulphide Bonds | Repulsive | Aromatic Stacking | Total |
---|---|---|---|---|---|---|---|---|
A7NDA | 3452 | 21 | 0 | 9 | 0 | 0 | 1 | 31 |
B7NDA_africa_mut | 3443 | 22 | 0 | 10 | 0 | 0 | 1 | 33 |
(Conservatives hydrophobic matches are hidden by default)
Chains | Residues | Contact types | |||||||
---|---|---|---|---|---|---|---|---|---|
A | B | A1 | A2 | B1 | B2 | A [1-2] | B [1-2] | AVD | Contact |
C-H | C-H | F486 | P99 | F486 | P99 | Hydrophobic | Hydrophobic | 0.55 | View |
C-H | C-H | F486 | F110 | F486 | F110 | Hydrophobic | Hydrophobic | 0.37 | View |
C-H | C-H | F486 | P99 | F486 | P99 | Hydrophobic | Hydrophobic | 0.53 | View |
C-H | C-H | Y489 | V52 | Y489 | V52 | Hydrophobic | Hydrophobic | 0.33 | View |
C-H | C-H | F486 | F110 | F486 | F110 | Hydrophobic | Hydrophobic | 0.5 | View |
C-H | C-H | F486 | F110 | F486 | F110 | Hydrophobic | Hydrophobic | 0.36 | View |
C-H | C-H | Y489 | V52 | Y489 | V52 | Hydrophobic | Hydrophobic | 0.31 | View |
C-H | C-H | Y489 | W50 | Y489 | W50 | Hydrophobic | Hydrophobic | 0.6 | View |
C-H | C-H | S477 | D108 | S477 | D108 | Hydrogen Bonds | Hydrogen Bonds | 0.53 | View |
C-H | C-H | Y473 | T104 | Y473 | T104 | Hydrogen Bonds | Hydrogen Bonds | 0.48 | View |
C-H | C-H | Y489 | V52 | Y489 | V52 | Hydrophobic | Hydrophobic | 0.44 | View |
C-H | C-H | Y489 | V52 | Y489 | V52 | Hydrophobic | Hydrophobic | 0.39 | View |
C-H | C-H | Y489 | V52 | Y489 | V52 | Hydrophobic | Hydrophobic | 0.24 | View |
C-H | C-H | A475 | C106 | A475 | C106 | Hydrophobic | Hydrophobic | 0.26 | View |
C-H | C-H | Y489 | V52 | Y489 | V52 | Hydrophobic | Hydrophobic | 0.46 | View |
C-H | C-H | F486 | F110 | F486 | F110 | Hydrophobic | Hydrophobic | 0.5 | View |
C-H | C-H | S477 | D108 | S477 | D108 | Hydrogen Bonds | Hydrogen Bonds | 0.44 | View |
C-H | C-H | F486 | P99 | F486 | P99 | Hydrophobic | Hydrophobic | 0.46 | View |
C-H | C-H | N487 | Y107 | N487 | Y107 | Hydrogen Bonds | Hydrogen Bonds | 0.3 | View |
C-H | C-H | F486 | P99 | F486 | P99 | Hydrophobic | Hydrophobic | 0.62 | View |
C-H | C-H | Y489 | V52 | Y489 | V52 | Hydrophobic | Hydrophobic | 0.25 | View |
C-H | C-H | S477 | D108 | S477 | D108 | Hydrogen Bonds | Hydrogen Bonds | 0.64 | View |
C-H | C-H | Y489 | V52 | Y489 | V52 | Hydrophobic | Hydrophobic | 0.4 | View |
C-H | C-H | Y489 | W50 | Y489 | W50 | Hydrophobic | Hydrophobic | 0.47 | View |
C-H | C-H | Y473 | T104 | Y473 | T104 | Hydrogen Bonds | Hydrogen Bonds | 0.48 | View |
C-H | C-H | Y489 | V52 | Y489 | V52 | Hydrophobic | Hydrophobic | 0.38 | View |
C-H | C-H | A475 | C106 | A475 | C106 | Hydrogen Bonds | Hydrogen Bonds | 0.39 | View |
C-H | C-H | F486 | F110 | F486 | F110 | Aromatic Stacking | Aromatic Stacking | 0.43 | View |
C-H | C-H | T478 | D108 | T478 | D108 | Hydrogen Bonds | Hydrogen Bonds | 0.43 | View |
C-H | C-H | Y489 | V52 | Y489 | V52 | Hydrophobic | Hydrophobic | 0.39 | View |
Residue Match Frequency | View |
---|---|
GLU | |
ALA | |
TYR | |
THR | |
LEU | |
SER | |
PHE | |
GLY | |
MET | |
PRO | |
LYS | |
VAL | |
HIS | |
ILE | |
CYS | |
ARG | |
GLN | |
ASP | |
ASN | |
TRP |