VTR

3 main matches found (10 matches in total )

Execution time: 48.0 seconds

Match RMSD = 0.54

VTR = 0.01

Average AVD = 0.49 Å

Parameters

Chains(7ND8.pdb ): B versus L

Chains(7ND8_africa_mut.pdb ) B versus L

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7ND8 3447 7 0 2 0 0 1 10
B7ND8_africa_mut 3438 9 0 2 0 0 1 12

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
B-L B-L F486 Y32 F486 Y32 Hydrophobic Hydrophobic 0.64 View
B-L B-L E484 A94 K484 A94 Hydrogen Bonds Hydrogen Bonds 0.3 View
B-L B-L F486 Y32 F486 Y32 Hydrophobic Hydrophobic 0.36 View
B-L B-L F486 Y32 F486 Y32 Hydrophobic Hydrophobic 0.37 View
B-L B-L F486 N92 F486 N92 Hydrogen Bonds Hydrogen Bonds 0.41 View
B-L B-L F486 Y32 F486 Y32 Aromatic Stacking Aromatic Stacking 0.42 View
B-L B-L F486 Y32 F486 Y32 Hydrophobic Hydrophobic 0.35 View
B-L B-L F486 Y32 F486 Y32 Hydrophobic Hydrophobic 0.31 View
B-L B-L V483 N93 V483 N93 Hydrophobic Hydrophobic 0.87 View
B-L B-L V483 L95 V483 L95 Hydrophobic Hydrophobic 0.89 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7ND8 | 7ND8_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7ND8_africa_mut B-L V483 N93 Hydrophobic 4.19 View
7ND8_africa_mut B-L V483 A94 Hydrophobic 3.34 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph