Execution time: 52.0 seconds
Match RMSD = 0.63
VTR = 0.03
Average AVD = 0.54 Å
Chains(7ND8.pdb ): B versus H
Chains(7ND8_africa_mut.pdb ) B versus H
Cutoff: 2 Å
Detection of structural contacts in α-helices OFF
Contacts found | Number of residues | Hydrophobic | Attractive | Hydrogen Bonds | Disulphide Bonds | Repulsive | Aromatic Stacking | Total |
---|---|---|---|---|---|---|---|---|
A7ND8 | 3447 | 22 | 8 | 7 | 0 | 0 | 1 | 38 |
B7ND8_africa_mut | 3438 | 30 | 0 | 3 | 0 | 4 | 1 | 38 |
(Conservatives hydrophobic matches are hidden by default)
Chains | Residues | Contact types | |||||||
---|---|---|---|---|---|---|---|---|---|
A | B | A1 | A2 | B1 | B2 | A [1-2] | B [1-2] | AVD | Contact |
B-H | B-H | F456 | L105 | F456 | L105 | Hydrophobic | Hydrophobic | 0.69 | View |
B-H | B-H | F486 | W107 | F486 | W107 | Hydrophobic | Hydrophobic | 0.18 | View |
B-H | B-H | E484 | Y59 | K484 | Y59 | Hydrogen Bonds | Hydrogen Bonds | 0.34 | View |
B-H | B-H | E484 | R52 | K484 | R52 | Attractive Hydrogen Bonds | Repulsive | 1.4 | View |
B-H | B-H | F456 | L105 | F456 | L105 | Hydrophobic | Hydrophobic | 0.66 | View |
B-H | B-H | E484 | Y59 | K484 | Y59 | Hydrophobic | Hydrophobic | 0.59 | View |
B-H | B-H | E484 | R52 | K484 | R52 | Attractive Hydrogen Bonds | Repulsive | 1.07 | View |
B-H | B-H | L455 | F104 | L455 | F104 | Hydrophobic | Hydrophobic | 0.3 | View |
B-H | B-H | F486 | W107 | F486 | W107 | Hydrophobic | Hydrophobic | 0.22 | View |
B-H | B-H | G482 | Y59 | G482 | Y59 | Hydrogen Bonds | Hydrogen Bonds | 0.24 | View |
B-H | B-H | F490 | T57 | F490 | T57 | Hydrophobic | Hydrophobic | 0.29 | View |
B-H | B-H | F456 | F104 | F456 | F104 | Hydrophobic | Hydrophobic | 0.45 | View |
B-H | B-H | F490 | T57 | F490 | T57 | Hydrophobic | Hydrophobic | 0.26 | View |
B-H | B-H | F490 | T57 | F490 | T57 | Hydrophobic | Hydrophobic | 0.31 | View |
B-H | B-H | F490 | H56 | F490 | H56 | Hydrophobic | Hydrophobic | 0.41 | View |
B-H | B-H | L455 | F104 | L455 | F104 | Hydrophobic | Hydrophobic | 0.53 | View |
B-H | B-H | F490 | H56 | F490 | H56 | Hydrophobic | Hydrophobic | 0.38 | View |
B-H | B-H | L455 | F104 | L455 | F104 | Hydrophobic | Hydrophobic | 0.45 | View |
B-H | B-H | F490 | H56 | F490 | H56 | Aromatic Stacking | Aromatic Stacking | 0.53 | View |
B-H | B-H | V483 | Y59 | V483 | Y59 | Hydrophobic | Hydrophobic | 0.37 | View |
B-H | B-H | E484 | R52 | K484 | R52 | Attractive | Repulsive | 1.38 | View |
B-H | B-H | V483 | Y59 | V483 | Y59 | Hydrophobic | Hydrophobic | 0.38 | View |
B-H | B-H | F490 | H56 | F490 | H56 | Hydrophobic | Hydrophobic | 0.32 | View |
B-H | B-H | F490 | H56 | F490 | H56 | Hydrophobic | Hydrophobic | 0.37 | View |
B-H | B-H | Y489 | L105 | Y489 | L105 | Hydrophobic | Hydrophobic | 0.72 | View |
B-H | B-H | E484 | R52 | K484 | R52 | Attractive | Repulsive | 1.25 | View |
B-H | B-H | F490 | T57 | F490 | T57 | Hydrophobic | Hydrophobic | 0.31 | View |
B-H | B-H | F456 | F104 | F456 | F104 | Hydrophobic | Hydrophobic | 0.48 | View |
B-H | B-H | Y489 | L105 | Y489 | L105 | Hydrophobic | Hydrophobic | 0.77 | View |
Protein | Chains | Residue1 | Residue2 | Contact types | Distance | Contact |
---|---|---|---|---|---|---|
7ND8 | B-H | E484 | Y50 | Hydrogen Bonds | 3.17 | View |
7ND8 | B-H | E484 | R52 | Attractive, Hydrogen Bonds | 3.10 | View |
7ND8 | B-H | E484 | R52 | Attractive | 4.21 | View |
7ND8 | B-H | E484 | R52 | Attractive | 5.39 | View |
7ND8 | B-H | E484 | R52 | Attractive | 4.46 | View |
7ND8 | B-H | E484 | T57 | Hydrogen Bonds | 3.34 | View |
7ND8_africa_mut | B-H | L455 | F104 | Hydrophobic | 4.38 | View |
7ND8_africa_mut | B-H | L455 | F104 | Hydrophobic | 4.45 | View |
7ND8_africa_mut | B-H | F456 | F104 | Hydrophobic | 4.10 | View |
7ND8_africa_mut | B-H | V483 | Y59 | Hydrogen Bonds | 3.83 | View |
7ND8_africa_mut | B-H | V483 | Y59 | Hydrophobic | 4.41 | View |
7ND8_africa_mut | B-H | V483 | Y59 | Hydrophobic | 4.42 | View |
7ND8_africa_mut | B-H | V483 | Y59 | Hydrophobic | 4.03 | View |
7ND8_africa_mut | B-H | V483 | Y59 | Hydrophobic | 4.03 | View |
7ND8_africa_mut | B-H | Y489 | L105 | Hydrophobic | 3.97 | View |
Residue Match Frequency | View |
---|---|
GLU | |
ALA | |
TYR | |
THR | |
LEU | |
SER | |
PHE | |
GLY | |
MET | |
PRO | |
LYS | |
VAL | |
HIS | |
ILE | |
CYS | |
ARG | |
GLN | |
ASP | |
ASN | |
TRP |