Execution time: 28.0 seconds
Match RMSD = 0.64
VTR = 0.01
Average AVD = 0.58 Å
Chains(7ND7.pdb ): C versus J
Chains(7ND7_africa_mut.pdb ) C versus J
Cutoff: 2 Å
Detection of structural contacts in α-helices OFF
Contacts found | Number of residues | Hydrophobic | Attractive | Hydrogen Bonds | Disulphide Bonds | Repulsive | Aromatic Stacking | Total |
---|---|---|---|---|---|---|---|---|
A7ND7 | 3699 | 19 | 0 | 14 | 0 | 0 | 0 | 33 |
B7ND7_africa_mut | 3690 | 23 | 0 | 12 | 0 | 0 | 0 | 35 |
(Conservatives hydrophobic matches are hidden by default)
Chains | Residues | Contact types | |||||||
---|---|---|---|---|---|---|---|---|---|
A | B | A1 | A2 | B1 | B2 | A [1-2] | B [1-2] | AVD | Contact |
C-J | C-J | S494 | T30 | S494 | T30 | Hydrogen Bonds | Hydrogen Bonds | 0.36 | View |
C-J | C-J | E484 | S55 | K484 | S55 | Hydrogen Bonds | Hydrogen Bonds | 1.35 | View |
C-J | C-J | Q493 | F102 | Q493 | F102 | Hydrophobic | Hydrophobic | 0.42 | View |
C-J | C-J | Y449 | T74 | Y449 | T74 | Hydrogen Bonds | Hydrogen Bonds | 0.6 | View |
C-J | C-J | Q493 | N54 | Q493 | N54 | Hydrogen Bonds | Hydrogen Bonds | 0.63 | View |
C-J | C-J | F456 | M104 | F456 | M104 | Hydrophobic | Hydrophobic | 0.63 | View |
C-J | C-J | L455 | F102 | L455 | F102 | Hydrophobic | Hydrophobic | 0.73 | View |
C-J | C-J | F456 | M104 | F456 | M104 | Hydrophobic | Hydrophobic | 0.62 | View |
C-J | C-J | Y449 | T30 | Y449 | T30 | Hydrophobic | Hydrophobic | 0.48 | View |
C-J | C-J | E484 | Y33 | K484 | Y33 | Hydrogen Bonds | Hydrogen Bonds | 1.44 | View |
C-J | C-J | Y489 | M104 | Y489 | M104 | Hydrophobic | Hydrophobic | 0.61 | View |
C-J | C-J | Q493 | T30 | Q493 | T30 | Hydrogen Bonds | Hydrogen Bonds | 0.37 | View |
C-J | C-J | Y449 | T30 | Y449 | T30 | Hydrophobic | Hydrophobic | 0.58 | View |
C-J | C-J | Y449 | S77 | Y449 | S77 | Hydrogen Bonds | Hydrogen Bonds | 0.61 | View |
C-J | C-J | Y489 | M104 | Y489 | M104 | Hydrophobic | Hydrophobic | 0.61 | View |
C-J | C-J | S494 | T30 | S494 | T30 | Hydrogen Bonds | Hydrogen Bonds | 0.38 | View |
C-J | C-J | L455 | F102 | L455 | F102 | Hydrophobic | Hydrophobic | 0.65 | View |
C-J | C-J | Y489 | M104 | Y489 | M104 | Hydrogen Bonds | Hydrogen Bonds | 0.39 | View |
C-J | C-J | F456 | M104 | F456 | M104 | Hydrophobic | Hydrophobic | 0.39 | View |
C-J | C-J | L455 | F102 | L455 | F102 | Hydrophobic | Hydrophobic | 0.48 | View |
C-J | C-J | Q493 | S103 | Q493 | S103 | Hydrogen Bonds | Hydrogen Bonds | 0.29 | View |
C-J | C-J | Y489 | M104 | Y489 | M104 | Hydrophobic | Hydrophobic | 0.66 | View |
C-J | C-J | Y489 | M104 | Y489 | M104 | Hydrophobic | Hydrophobic | 0.41 | View |
C-J | C-J | Y489 | M104 | Y489 | M104 | Hydrophobic | Hydrophobic | 0.28 | View |
C-J | C-J | Y489 | M104 | Y489 | M104 | Hydrophobic | Hydrophobic | 0.66 | View |
C-J | C-J | E484 | W50 | K484 | W50 | Hydrophobic | Hydrophobic | 0.59 | View |
C-J | C-J | L492 | N54 | L492 | N54 | Hydrogen Bonds | Hydrogen Bonds | 0.7 | View |
C-J | C-J | Q493 | T30 | Q493 | T30 | Hydrogen Bonds | Hydrogen Bonds | 0.33 | View |
C-J | C-J | Y449 | T30 | Y449 | T30 | Hydrophobic | Hydrophobic | 0.63 | View |
C-J | C-J | Y489 | M104 | Y489 | M104 | Hydrophobic | Hydrophobic | 0.47 | View |
C-J | C-J | Y489 | M104 | Y489 | M104 | Hydrophobic | Hydrophobic | 0.72 | View |
Protein | Chains | Residue1 | Residue2 | Contact types | Distance | Contact |
---|---|---|---|---|---|---|
7ND7 | C-J | E484 | N52 | Hydrogen Bonds | 2.57 | View |
7ND7 | C-J | E484 | S55 | Hydrogen Bonds | 2.49 | View |
7ND7_africa_mut | C-J | F456 | M104 | Hydrophobic | 4.21 | View |
7ND7_africa_mut | C-J | Y489 | M104 | Hydrophobic | 4.26 | View |
7ND7_africa_mut | C-J | Y489 | M104 | Hydrophobic | 4.29 | View |
7ND7_africa_mut | C-J | Q493 | F102 | Hydrophobic | 4.45 | View |
Residue Match Frequency | View |
---|---|
GLU | |
ALA | |
TYR | |
THR | |
LEU | |
SER | |
PHE | |
GLY | |
MET | |
PRO | |
LYS | |
VAL | |
HIS | |
ILE | |
CYS | |
ARG | |
GLN | |
ASP | |
ASN | |
TRP |