Execution time: 46.0 seconds
Match RMSD = 0.77
VTR = 0.05
Average AVD = 0.71 Å
Chains(7ND6.pdb ): B versus L
Chains(7ND6_africa_mut.pdb ) B versus L
Cutoff: 2 Å
Detection of structural contacts in α-helices OFF
Contacts found | Number of residues | Hydrophobic | Attractive | Hydrogen Bonds | Disulphide Bonds | Repulsive | Aromatic Stacking | Total |
---|---|---|---|---|---|---|---|---|
A7ND6 | 3409 | 12 | 0 | 16 | 0 | 0 | 1 | 29 |
B7ND6_africa_mut | 3406 | 23 | 0 | 21 | 0 | 0 | 1 | 45 |
(Conservatives hydrophobic matches are hidden by default)
Chains | Residues | Contact types | |||||||
---|---|---|---|---|---|---|---|---|---|
A | B | A1 | A2 | B1 | B2 | A [1-2] | B [1-2] | AVD | Contact |
B-L | B-L | Q498 | S67 | Q498 | S67 | Hydrogen Bonds | Hydrogen Bonds | 0.52 | View |
B-L | B-L | Y505 | I2 | Y505 | I2 | Hydrophobic | Hydrophobic | 1.03 | View |
B-L | B-L | Y505 | I29 | Y505 | I29 | Hydrophobic | Hydrophobic | 0.91 | View |
B-L | B-L | N501 | S30 | T500 | S30 | Hydrogen Bonds | Hydrogen Bonds | 1.59 | View |
B-L | B-L | Y505 | Y32 | Y505 | Y32 | Hydrophobic | Hydrophobic | 0.97 | View |
B-L | B-L | Y505 | Q90 | Y505 | Q90 | Hydrogen Bonds | Hydrogen Bonds | 0.88 | View |
B-L | B-L | R403 | N92 | R403 | N92 | Hydrogen Bonds | Hydrogen Bonds | 0.12 | View |
B-L | B-L | Y505 | Y32 | Y505 | Y32 | Hydrophobic | Hydrophobic | 0.95 | View |
B-L | B-L | Y453 | N92 | Y453 | N92 | Hydrogen Bonds | Hydrogen Bonds | 0.41 | View |
B-L | B-L | Q498 | S30 | Q498 | S30 | Hydrogen Bonds | Hydrogen Bonds | 0.47 | View |
B-L | B-L | Q409 | Y94 | Q409 | Y94 | Hydrogen Bonds | Hydrogen Bonds | 0.48 | View |
B-L | B-L | G502 | G28 | G502 | G28 | Hydrogen Bonds | Hydrogen Bonds | 1.13 | View |
B-L | B-L | Y505 | Y32 | Y505 | Y32 | Hydrophobic | Hydrophobic | 0.86 | View |
B-L | B-L | Y505 | I2 | Y505 | I2 | Hydrophobic | Hydrophobic | 0.92 | View |
B-L | B-L | Y505 | I29 | Y505 | I29 | Hydrophobic | Hydrophobic | 0.94 | View |
B-L | B-L | Y505 | N92 | Y505 | N92 | Hydrogen Bonds | Hydrogen Bonds | 0.76 | View |
B-L | B-L | D405 | Y94 | D405 | Y94 | Hydrogen Bonds | Hydrogen Bonds | 0.5 | View |
B-L | B-L | Y505 | Y32 | Y505 | Y32 | Hydrophobic | Hydrophobic | 0.88 | View |
B-L | B-L | Y505 | Y32 | Y505 | Y32 | Aromatic Stacking | Aromatic Stacking | 0.65 | View |
B-L | B-L | G496 | S30 | G496 | S30 | Hydrogen Bonds | Hydrogen Bonds | 0.43 | View |
B-L | B-L | G496 | Y32 | G496 | Y32 | Hydrogen Bonds | Hydrogen Bonds | 0.33 | View |
B-L | B-L | T500 | G28 | T500 | G28 | Hydrogen Bonds | Hydrogen Bonds | 0.55 | View |
B-L | B-L | Q498 | S67 | Q498 | S67 | Hydrogen Bonds | Hydrogen Bonds | 0.41 | View |
B-L | B-L | D405 | Y94 | D405 | Y94 | Hydrophobic | Hydrophobic | 0.45 | View |
B-L | B-L | Y505 | I29 | Y505 | I29 | Hydrophobic | Hydrophobic | 0.83 | View |
B-L | B-L | R403 | N92 | R403 | N92 | Hydrogen Bonds | Hydrogen Bonds | 0.23 | View |
B-L | B-L | Y505 | I29 | Y505 | I29 | Hydrophobic | Hydrophobic | 0.73 | View |
B-L | B-L | Y505 | I29 | Y505 | I29 | Hydrophobic | Hydrophobic | 0.84 | View |
Protein | Chains | Residue1 | Residue2 | Contact types | Distance | Contact |
---|---|---|---|---|---|---|
7ND6 | B-L | K417 | N92 | Hydrogen Bonds | 3.58 | View |
7ND6_africa_mut | B-L | Q498 | S30 | Hydrogen Bonds | 3.88 | View |
7ND6_africa_mut | B-L | Y501 | I2 | Hydrophobic | 4.39 | View |
7ND6_africa_mut | B-L | Y501 | I2 | Hydrophobic | 4.09 | View |
7ND6_africa_mut | B-L | Y501 | I2 | Hydrophobic | 3.17 | View |
7ND6_africa_mut | B-L | Y501 | Q27 | Hydrophobic | 3.92 | View |
7ND6_africa_mut | B-L | Y501 | Q27 | Hydrophobic | 4.44 | View |
7ND6_africa_mut | B-L | Y501 | Q27 | Hydrophobic | 3.26 | View |
7ND6_africa_mut | B-L | Y501 | Q27 | Hydrophobic | 4.40 | View |
7ND6_africa_mut | B-L | Y501 | Q27 | Hydrogen Bonds | 2.86 | View |
7ND6_africa_mut | B-L | Y501 | G28 | Hydrogen Bonds | 3.27 | View |
7ND6_africa_mut | B-L | Y501 | I29 | Hydrophobic | 4.00 | View |
7ND6_africa_mut | B-L | Y501 | I29 | Hydrophobic | 3.62 | View |
7ND6_africa_mut | B-L | G502 | Q27 | Hydrogen Bonds | 3.72 | View |
7ND6_africa_mut | B-L | V503 | Q27 | Hydrogen Bonds | 3.86 | View |
7ND6_africa_mut | B-L | Y505 | Y32 | Hydrophobic | 4.49 | View |
7ND6_africa_mut | B-L | Y505 | Y32 | Hydrophobic | 4.07 | View |
7ND6_africa_mut | B-L | Y505 | L91 | Hydrogen Bonds | 3.42 | View |
Residue Match Frequency | View |
---|---|
GLU | |
ALA | |
TYR | |
THR | |
LEU | |
SER | |
PHE | |
GLY | |
MET | |
PRO | |
LYS | |
VAL | |
HIS | |
ILE | |
CYS | |
ARG | |
GLN | |
ASP | |
ASN | |
TRP |