Execution time: 49.0 seconds
Match RMSD = 0.63
VTR = 0.03
Average AVD = 0.54 Å
Chains(7ND5.pdb ): B versus L
Chains(7ND5_africa_mut.pdb ) B versus L
Cutoff: 2 Å
Detection of structural contacts in α-helices OFF
Contacts found | Number of residues | Hydrophobic | Attractive | Hydrogen Bonds | Disulphide Bonds | Repulsive | Aromatic Stacking | Total |
---|---|---|---|---|---|---|---|---|
A7ND5 | 3406 | 13 | 10 | 24 | 0 | 2 | 1 | 50 |
B7ND5_africa_mut | 3403 | 21 | 8 | 29 | 0 | 2 | 1 | 61 |
(Conservatives hydrophobic matches are hidden by default)
Chains | Residues | Contact types | |||||||
---|---|---|---|---|---|---|---|---|---|
A | B | A1 | A2 | B1 | B2 | A [1-2] | B [1-2] | AVD | Contact |
B-L | B-L | Q498 | G68 | Q498 | G68 | Hydrogen Bonds | Hydrogen Bonds | 0.27 | View |
B-L | B-L | E406 | D92 | E406 | D92 | Repulsive | Repulsive | 0.68 | View |
B-L | B-L | Y505 | Y32 | Y505 | Y32 | Hydrophobic | Hydrophobic | 0.45 | View |
B-L | B-L | Q498 | S30 | Q498 | S30 | Hydrogen Bonds | Hydrogen Bonds | 0.62 | View |
B-L | B-L | E406 | D92 | E406 | D92 | Repulsive | Repulsive | 0.67 | View |
B-L | B-L | T500 | G28 | T500 | G28 | Hydrogen Bonds | Hydrogen Bonds | 0.47 | View |
B-L | B-L | Y505 | Y32 | Y505 | Y32 | Hydrophobic | Hydrophobic | 0.45 | View |
B-L | B-L | R408 | Y94 | R408 | Y94 | Hydrogen Bonds | Hydrogen Bonds | 0.5 | View |
B-L | B-L | Y505 | L91 | Y505 | L91 | Hydrogen Bonds | Hydrogen Bonds | 0.44 | View |
B-L | B-L | Y505 | I2 | Y505 | I2 | Hydrophobic | Hydrophobic | 0.6 | View |
B-L | B-L | Q498 | S67 | Q498 | S67 | Hydrogen Bonds | Hydrogen Bonds | 0.49 | View |
B-L | B-L | Y505 | I2 | Y505 | I2 | Hydrophobic | Hydrophobic | 0.64 | View |
B-L | B-L | Y505 | Y32 | Y505 | Y32 | Aromatic Stacking | Aromatic Stacking | 0.44 | View |
B-L | B-L | R408 | Y94 | R408 | Y94 | Hydrogen Bonds | Hydrogen Bonds | 0.23 | View |
B-L | B-L | Y505 | Y32 | Y505 | Y32 | Hydrophobic | Hydrophobic | 0.5 | View |
B-L | B-L | R403 | D92 | R403 | D92 | Attractive | Attractive | 0.48 | View |
B-L | B-L | Y505 | Y32 | Y505 | Y32 | Hydrophobic | Hydrophobic | 0.49 | View |
B-L | B-L | D405 | Y94 | D405 | Y94 | Hydrophobic | Hydrophobic | 0.19 | View |
B-L | B-L | R403 | D92 | R403 | D92 | Attractive | Attractive | 0.56 | View |
B-L | B-L | N501 | S30 | Q498 | S30 | Hydrogen Bonds | Hydrogen Bonds | 1.84 | View |
B-L | B-L | Y505 | I29 | Y505 | I29 | Hydrophobic | Hydrophobic | 0.57 | View |
B-L | B-L | Y505 | D92 | Y505 | D92 | Hydrogen Bonds | Hydrogen Bonds | 0.49 | View |
B-L | B-L | R403 | D92 | R403 | D92 | Hydrogen Bonds | Hydrogen Bonds | 0.37 | View |
B-L | B-L | G502 | G28 | G502 | G28 | Hydrogen Bonds | Hydrogen Bonds | 1.07 | View |
B-L | B-L | R403 | D92 | R403 | D92 | Attractive Hydrogen Bonds | Attractive Hydrogen Bonds | 0.45 | View |
B-L | B-L | Y505 | Y32 | Y505 | Y32 | Hydrophobic | Hydrophobic | 0.46 | View |
B-L | B-L | Y505 | S93 | Y505 | S93 | Hydrogen Bonds | Hydrogen Bonds | 0.47 | View |
B-L | B-L | G496 | S30 | G496 | S30 | Hydrogen Bonds | Hydrogen Bonds | 0.55 | View |
B-L | B-L | Q498 | S30 | Q498 | S30 | Hydrogen Bonds | Hydrogen Bonds | 0.54 | View |
B-L | B-L | R403 | D92 | R403 | D92 | Hydrogen Bonds | Hydrogen Bonds | 0.26 | View |
B-L | B-L | N501 | S30 | T500 | S30 | Hydrogen Bonds | Hydrogen Bonds | 1.94 | View |
B-L | B-L | R403 | D92 | R403 | D92 | Attractive | Attractive | 0.44 | View |
B-L | B-L | Y505 | Y32 | Y505 | Y32 | Hydrophobic | Hydrophobic | 0.52 | View |
B-L | B-L | Y505 | Y32 | Y505 | Y32 | Hydrophobic | Hydrophobic | 0.59 | View |
B-L | B-L | D405 | Y94 | D405 | Y94 | Hydrophobic | Hydrophobic | 0.21 | View |
B-L | B-L | R403 | D92 | R403 | D92 | Attractive | Attractive | 0.57 | View |
B-L | B-L | Y495 | Y32 | Y495 | Y32 | Hydrogen Bonds | Hydrogen Bonds | 0.35 | View |
B-L | B-L | Y505 | Q90 | Y505 | Q90 | Hydrogen Bonds | Hydrogen Bonds | 0.5 | View |
B-L | B-L | R403 | D92 | R403 | D92 | Attractive | Attractive | 0.47 | View |
B-L | B-L | Q498 | S67 | Q498 | S67 | Hydrogen Bonds | Hydrogen Bonds | 0.35 | View |
B-L | B-L | Y453 | Y32 | Y453 | Y32 | Hydrogen Bonds | Hydrogen Bonds | 0.35 | View |
B-L | B-L | R403 | D92 | R403 | D92 | Attractive | Attractive | 0.43 | View |
B-L | B-L | R403 | D92 | R403 | D92 | Attractive | Attractive Hydrogen Bonds | 0.47 | View |
B-L | B-L | Y505 | Y32 | Y505 | Y32 | Hydrophobic | Hydrophobic | 0.49 | View |
Protein | Chains | Residue1 | Residue2 | Contact types | Distance | Contact |
---|---|---|---|---|---|---|
7ND5 | B-L | K417 | D92 | Attractive, Hydrogen Bonds | 3.13 | View |
7ND5 | B-L | K417 | D92 | Attractive, Hydrogen Bonds | 2.49 | View |
7ND5 | B-L | N501 | S30 | Hydrogen Bonds | 3.33 | View |
7ND5_africa_mut | B-L | S494 | Y32 | Hydrogen Bonds | 3.63 | View |
7ND5_africa_mut | B-L | T500 | G28 | Hydrogen Bonds | 3.83 | View |
7ND5_africa_mut | B-L | Y501 | I2 | Hydrophobic | 4.16 | View |
7ND5_africa_mut | B-L | Y501 | I2 | Hydrophobic | 3.28 | View |
7ND5_africa_mut | B-L | Y501 | Q27 | Hydrophobic | 3.95 | View |
7ND5_africa_mut | B-L | Y501 | Q27 | Hydrophobic | 4.38 | View |
7ND5_africa_mut | B-L | Y501 | Q27 | Hydrophobic | 3.26 | View |
7ND5_africa_mut | B-L | Y501 | Q27 | Hydrophobic | 4.47 | View |
7ND5_africa_mut | B-L | Y501 | Q27 | Hydrogen Bonds | 3.34 | View |
7ND5_africa_mut | B-L | Y501 | Q27 | Hydrogen Bonds | 2.90 | View |
7ND5_africa_mut | B-L | Y501 | G28 | Hydrogen Bonds | 3.25 | View |
7ND5_africa_mut | B-L | Y501 | I29 | Hydrophobic | 4.45 | View |
7ND5_africa_mut | B-L | Y501 | I29 | Hydrophobic | 4.21 | View |
7ND5_africa_mut | B-L | G502 | Q27 | Hydrogen Bonds | 3.13 | View |
7ND5_africa_mut | B-L | V503 | Q27 | Hydrogen Bonds | 3.62 | View |
Residue Match Frequency | View |
---|---|
GLU | |
ALA | |
TYR | |
THR | |
LEU | |
SER | |
PHE | |
GLY | |
MET | |
PRO | |
LYS | |
VAL | |
HIS | |
ILE | |
CYS | |
ARG | |
GLN | |
ASP | |
ASN | |
TRP |