Execution time: 26.0 seconds
Match RMSD = 0.95
VTR = 0.05
Average AVD = 0.88 Å
Chains(7ND4.pdb ): C versus L
Chains(7ND4_africa_mut.pdb ) C versus L
Cutoff: 2 Å
Detection of structural contacts in α-helices OFF
Contacts found | Number of residues | Hydrophobic | Attractive | Hydrogen Bonds | Disulphide Bonds | Repulsive | Aromatic Stacking | Total |
---|---|---|---|---|---|---|---|---|
A7ND4 | 3729 | 12 | 7 | 6 | 0 | 1 | 1 | 27 |
B7ND4_africa_mut | 3720 | 21 | 6 | 7 | 0 | 1 | 1 | 36 |
(Conservatives hydrophobic matches are hidden by default)
Chains | Residues | Contact types | |||||||
---|---|---|---|---|---|---|---|---|---|
A | B | A1 | A2 | B1 | B2 | A [1-2] | B [1-2] | AVD | Contact |
C-L | C-L | F456 | Y51 | F456 | Y51 | Hydrophobic | Hydrophobic | 0.71 | View |
C-L | C-L | F456 | Y51 | F456 | Y51 | Hydrophobic | Hydrophobic | 0.69 | View |
C-L | C-L | R403 | D53 | R403 | D53 | Attractive Hydrogen Bonds | Attractive Hydrogen Bonds | 1.42 | View |
C-L | C-L | F456 | Y51 | F456 | Y51 | Hydrophobic | Hydrophobic | 0.65 | View |
C-L | C-L | R403 | D53 | R403 | D53 | Attractive | Attractive | 0.81 | View |
C-L | C-L | R403 | D53 | R403 | D53 | Attractive | Attractive | 1.32 | View |
C-L | C-L | L455 | Y51 | L455 | Y51 | Hydrophobic | Hydrophobic | 0.56 | View |
C-L | C-L | R403 | D53 | R403 | D53 | Attractive | Attractive | 1.25 | View |
C-L | C-L | F456 | Y51 | F456 | Y51 | Hydrophobic | Hydrophobic | 0.73 | View |
C-L | C-L | F456 | Y51 | F456 | Y51 | Aromatic Stacking | Aromatic Stacking | 0.33 | View |
C-L | C-L | R403 | D53 | R403 | D53 | Attractive | Attractive | 1.32 | View |
C-L | C-L | K417 | Y51 | N417 | Y51 | Hydrogen Bonds | Hydrogen Bonds | 1.6 | View |
C-L | C-L | L455 | Y51 | L455 | Y51 | Hydrophobic | Hydrophobic | 0.78 | View |
C-L | C-L | Y505 | D53 | Y505 | D53 | Hydrogen Bonds | Hydrogen Bonds | 1.46 | View |
C-L | C-L | L455 | Y51 | L455 | Y51 | Hydrophobic | Hydrophobic | 0.56 | View |
C-L | C-L | L455 | Y51 | L455 | Y51 | Hydrophobic | Hydrophobic | 0.53 | View |
C-L | C-L | G502 | D61 | G502 | D61 | Hydrogen Bonds | Hydrogen Bonds | 1.17 | View |
C-L | C-L | R403 | D53 | R403 | D53 | Attractive | Attractive | 0.71 | View |
C-L | C-L | L455 | Y51 | L455 | Y51 | Hydrogen Bonds | Hydrogen Bonds | 0.31 | View |
C-L | C-L | F456 | Y51 | F456 | Y51 | Hydrophobic | Hydrophobic | 0.69 | View |
C-L | C-L | L455 | Y51 | L455 | Y51 | Hydrophobic | Hydrophobic | 0.54 | View |
C-L | C-L | L455 | Y51 | L455 | Y51 | Hydrophobic | Hydrophobic | 0.75 | View |
C-L | C-L | E406 | D53 | E406 | D53 | Repulsive | Repulsive | 1.43 | View |
C-L | C-L | F456 | Y51 | F456 | Y51 | Hydrophobic | Hydrophobic | 0.7 | View |
Protein | Chains | Residue1 | Residue2 | Contact types | Distance | Contact |
---|---|---|---|---|---|---|
7ND4 | C-L | R403 | D53 | Hydrogen Bonds | 3.67 | View |
7ND4 | C-L | K417 | D52 | Attractive | 5.56 | View |
7ND4_africa_mut | C-L | L455 | Y51 | Hydrophobic | 4.38 | View |
7ND4_africa_mut | C-L | L455 | Y51 | Hydrophobic | 4.33 | View |
7ND4_africa_mut | C-L | L455 | Y51 | Hydrophobic | 3.90 | View |
7ND4_africa_mut | C-L | L455 | Y51 | Hydrophobic | 3.53 | View |
7ND4_africa_mut | C-L | Y501 | L55 | Hydrophobic | 3.89 | View |
7ND4_africa_mut | C-L | Y501 | D61 | Hydrophobic | 4.46 | View |
7ND4_africa_mut | C-L | Y501 | D61 | Hydrophobic | 3.81 | View |
7ND4_africa_mut | C-L | Y501 | D61 | Hydrophobic | 3.03 | View |
7ND4_africa_mut | C-L | Y501 | D61 | Hydrophobic | 3.17 | View |
7ND4_africa_mut | C-L | Y501 | D61 | Hydrogen Bonds | 2.61 | View |
7ND4_africa_mut | C-L | Y501 | F63 | Hydrogen Bonds | 2.86 | View |
Residue Match Frequency | View |
---|---|
GLU | |
ALA | |
TYR | |
THR | |
LEU | |
SER | |
PHE | |
GLY | |
MET | |
PRO | |
LYS | |
VAL | |
HIS | |
ILE | |
CYS | |
ARG | |
GLN | |
ASP | |
ASN | |
TRP |