Execution time: 29.0 seconds
Match RMSD = 0.49
VTR = 0.01
Average AVD = 0.43 Å
Chains(7ND4.pdb ): C versus H
Chains(7ND4_africa_mut.pdb ) C versus H
Cutoff: 2 Å
Detection of structural contacts in α-helices OFF
Contacts found | Number of residues | Hydrophobic | Attractive | Hydrogen Bonds | Disulphide Bonds | Repulsive | Aromatic Stacking | Total |
---|---|---|---|---|---|---|---|---|
A7ND4 | 3729 | 17 | 2 | 7 | 0 | 0 | 5 | 31 |
B7ND4_africa_mut | 3720 | 22 | 0 | 9 | 0 | 1 | 5 | 37 |
(Conservatives hydrophobic matches are hidden by default)
Chains | Residues | Contact types | |||||||
---|---|---|---|---|---|---|---|---|---|
A | B | A1 | A2 | B1 | B2 | A [1-2] | B [1-2] | AVD | Contact |
C-H | C-H | F486 | Y54 | F486 | Y54 | Hydrophobic | Hydrophobic | 0.26 | View |
C-H | C-H | Q493 | Y111 | Q493 | Y111 | Hydrogen Bonds | Hydrogen Bonds | 1.05 | View |
C-H | C-H | F456 | Y111 | F456 | Y111 | Aromatic Stacking | Aromatic Stacking | 0.41 | View |
C-H | C-H | Y489 | Y112 | Y489 | Y112 | Hydrophobic | Hydrophobic | 0.29 | View |
C-H | C-H | Y489 | Y112 | Y489 | Y112 | Hydrogen Bonds | Hydrogen Bonds | 0.42 | View |
C-H | C-H | G485 | S33 | G485 | S33 | Hydrogen Bonds | Hydrogen Bonds | 0.28 | View |
C-H | C-H | Y489 | Y112 | Y489 | Y112 | Aromatic Stacking | Aromatic Stacking | 0.24 | View |
C-H | C-H | Y489 | Y111 | Y489 | Y111 | Hydrophobic | Hydrophobic | 0.33 | View |
C-H | C-H | L455 | Y111 | L455 | Y111 | Hydrophobic | Hydrophobic | 0.56 | View |
C-H | C-H | F456 | Y112 | F456 | Y112 | Hydrophobic | Hydrophobic | 0.53 | View |
C-H | C-H | F486 | Y54 | F486 | Y54 | Hydrophobic | Hydrophobic | 0.35 | View |
C-H | C-H | L455 | Y111 | L455 | Y111 | Hydrophobic | Hydrophobic | 0.47 | View |
C-H | C-H | Y489 | Y111 | Y489 | Y111 | Aromatic Stacking | Aromatic Stacking | 0.3 | View |
C-H | C-H | F456 | Y111 | F456 | Y111 | Hydrophobic | Hydrophobic | 0.39 | View |
C-H | C-H | F486 | S33 | F486 | S33 | Hydrogen Bonds | Hydrogen Bonds | 0.29 | View |
C-H | C-H | F486 | Y54 | F486 | Y54 | Hydrophobic | Hydrophobic | 0.32 | View |
C-H | C-H | F456 | Y112 | F456 | Y112 | Hydrophobic | Hydrophobic | 0.54 | View |
C-H | C-H | N487 | S102 | N487 | S102 | Hydrogen Bonds | Hydrogen Bonds | 0.19 | View |
C-H | C-H | C488 | G104 | C488 | G104 | Hydrogen Bonds | Hydrogen Bonds | 0.47 | View |
C-H | C-H | F486 | Y54 | F486 | Y54 | Aromatic Stacking | Aromatic Stacking | 0.26 | View |
C-H | C-H | Y489 | Y111 | Y489 | Y111 | Hydrophobic | Hydrophobic | 0.39 | View |
C-H | C-H | Y489 | Y111 | Y489 | Y111 | Hydrophobic | Hydrophobic | 0.39 | View |
C-H | C-H | F486 | Y54 | F486 | Y54 | Hydrophobic | Hydrophobic | 0.36 | View |
C-H | C-H | E484 | K109 | K484 | K109 | Attractive | Repulsive | 1.47 | View |
C-H | C-H | F486 | Y54 | F486 | Y54 | Hydrophobic | Hydrophobic | 0.24 | View |
C-H | C-H | Y489 | Y111 | Y489 | Y111 | Hydrophobic | Hydrophobic | 0.45 | View |
C-H | C-H | F456 | Y112 | F456 | Y112 | Aromatic Stacking | Aromatic Stacking | 0.35 | View |
C-H | C-H | G485 | G104 | G485 | G104 | Hydrogen Bonds | Hydrogen Bonds | 0.19 | View |
C-H | C-H | Q493 | Y111 | Q493 | Y111 | Hydrophobic | Hydrophobic | 0.54 | View |
C-H | C-H | F456 | Y111 | F456 | Y111 | Hydrophobic | Hydrophobic | 0.42 | View |
Protein | Chains | Residue1 | Residue2 | Contact types | Distance | Contact |
---|---|---|---|---|---|---|
7ND4 | C-H | E484 | K109 | Attractive | 5.75 | View |
7ND4_africa_mut | C-H | L455 | Y111 | Hydrophobic | 4.46 | View |
7ND4_africa_mut | C-H | K484 | Y111 | Hydrogen Bonds | 2.87 | View |
7ND4_africa_mut | C-H | Y489 | G103 | Hydrogen Bonds | 3.82 | View |
7ND4_africa_mut | C-H | Y489 | Y111 | Hydrophobic | 4.38 | View |
7ND4_africa_mut | C-H | Y489 | Y111 | Hydrophobic | 4.21 | View |
7ND4_africa_mut | C-H | Y489 | Y111 | Hydrophobic | 4.30 | View |
7ND4_africa_mut | C-H | Y489 | Y111 | Hydrophobic | 3.91 | View |
Residue Match Frequency | View |
---|---|
GLU | |
ALA | |
TYR | |
THR | |
LEU | |
SER | |
PHE | |
GLY | |
MET | |
PRO | |
LYS | |
VAL | |
HIS | |
ILE | |
CYS | |
ARG | |
GLN | |
ASP | |
ASN | |
TRP |