Execution time: 27.0 seconds
Match RMSD = 0.98
VTR = 0.06
Average AVD = 0.92 Å
Chains(7ND4.pdb ): A versus E
Chains(7ND4_africa_mut.pdb ) A versus E
Cutoff: 2 Å
Detection of structural contacts in α-helices OFF
Contacts found | Number of residues | Hydrophobic | Attractive | Hydrogen Bonds | Disulphide Bonds | Repulsive | Aromatic Stacking | Total |
---|---|---|---|---|---|---|---|---|
A7ND4 | 3729 | 12 | 7 | 6 | 0 | 1 | 1 | 27 |
B7ND4_africa_mut | 3720 | 19 | 6 | 9 | 0 | 1 | 1 | 36 |
(Conservatives hydrophobic matches are hidden by default)
Chains | Residues | Contact types | |||||||
---|---|---|---|---|---|---|---|---|---|
A | B | A1 | A2 | B1 | B2 | A [1-2] | B [1-2] | AVD | Contact |
A-E | A-E | K417 | Y51 | N417 | Y51 | Hydrogen Bonds | Hydrogen Bonds | 1.56 | View |
A-E | A-E | E406 | D53 | E406 | D53 | Repulsive | Repulsive | 1.32 | View |
A-E | A-E | Y505 | L55 | Y505 | L55 | Hydrophobic | Hydrophobic | 0.78 | View |
A-E | A-E | L455 | Y51 | L455 | Y51 | Hydrophobic | Hydrophobic | 0.85 | View |
A-E | A-E | L455 | Y51 | L455 | Y51 | Hydrophobic | Hydrophobic | 0.64 | View |
A-E | A-E | L455 | Y51 | L455 | Y51 | Hydrogen Bonds | Hydrogen Bonds | 0.28 | View |
A-E | A-E | R403 | D53 | R403 | D53 | Attractive | Attractive | 1.22 | View |
A-E | A-E | L455 | Y51 | L455 | Y51 | Hydrophobic | Hydrophobic | 0.63 | View |
A-E | A-E | Y505 | L55 | Y505 | L55 | Hydrophobic | Hydrophobic | 0.55 | View |
A-E | A-E | Y505 | D53 | Y505 | D53 | Hydrogen Bonds | Hydrogen Bonds | 1.53 | View |
A-E | A-E | R403 | D53 | R403 | D53 | Attractive | Attractive | 0.9 | View |
A-E | A-E | F456 | Y51 | F456 | Y51 | Hydrophobic | Hydrophobic | 0.78 | View |
A-E | A-E | L455 | Y51 | L455 | Y51 | Hydrophobic | Hydrophobic | 0.82 | View |
A-E | A-E | R403 | D53 | R403 | D53 | Attractive | Attractive | 0.74 | View |
A-E | A-E | L455 | Y51 | L455 | Y51 | Hydrophobic | Hydrophobic | 0.61 | View |
A-E | A-E | F456 | Y51 | F456 | Y51 | Hydrophobic | Hydrophobic | 0.7 | View |
A-E | A-E | R403 | D53 | R403 | D53 | Attractive Hydrogen Bonds | Attractive Hydrogen Bonds | 1.42 | View |
A-E | A-E | G502 | D61 | G502 | D61 | Hydrogen Bonds | Hydrogen Bonds | 1.36 | View |
A-E | A-E | L455 | Y51 | L455 | Y51 | Hydrophobic | Hydrophobic | 0.6 | View |
A-E | A-E | F456 | Y51 | F456 | Y51 | Aromatic Stacking | Aromatic Stacking | 0.37 | View |
A-E | A-E | R403 | D53 | R403 | D53 | Attractive | Attractive | 1.2 | View |
A-E | A-E | F456 | Y51 | F456 | Y51 | Hydrophobic | Hydrophobic | 0.81 | View |
A-E | A-E | Y505 | L55 | Y505 | L55 | Hydrophobic | Hydrophobic | 1.02 | View |
A-E | A-E | R403 | D53 | R403 | D53 | Attractive | Attractive | 1.26 | View |
Protein | Chains | Residue1 | Residue2 | Contact types | Distance | Contact |
---|---|---|---|---|---|---|
7ND4 | A-E | R403 | D53 | Hydrogen Bonds | 3.53 | View |
7ND4 | A-E | K417 | D52 | Attractive | 5.95 | View |
7ND4_africa_mut | A-E | L455 | Y51 | Hydrophobic | 4.29 | View |
7ND4_africa_mut | A-E | L455 | Y51 | Hydrophobic | 3.88 | View |
7ND4_africa_mut | A-E | Y501 | L55 | Hydrophobic | 4.34 | View |
7ND4_africa_mut | A-E | Y501 | L55 | Hydrophobic | 3.59 | View |
7ND4_africa_mut | A-E | Y501 | D61 | Hydrophobic | 4.19 | View |
7ND4_africa_mut | A-E | Y501 | D61 | Hydrophobic | 3.47 | View |
7ND4_africa_mut | A-E | Y501 | D61 | Hydrophobic | 3.52 | View |
7ND4_africa_mut | A-E | Y501 | D61 | Hydrogen Bonds | 2.83 | View |
7ND4_africa_mut | A-E | Y501 | F63 | Hydrogen Bonds | 3.01 | View |
7ND4_africa_mut | A-E | Y505 | L54 | Hydrogen Bonds | 3.87 | View |
7ND4_africa_mut | A-E | Y505 | L55 | Hydrogen Bonds | 3.47 | View |
Residue Match Frequency | View |
---|---|
GLU | |
ALA | |
TYR | |
THR | |
LEU | |
SER | |
PHE | |
GLY | |
MET | |
PRO | |
LYS | |
VAL | |
HIS | |
ILE | |
CYS | |
ARG | |
GLN | |
ASP | |
ASN | |
TRP |