VTR

25 main matches found (43 matches in total )

Execution time: 26.0 seconds

Match RMSD = 0.63

VTR = 0.03

Average AVD = 0.55 Å

Parameters

Chains(7ND3.pdb ): B versus H

Chains(7ND3_africa_mut.pdb ) B versus H

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7ND3 3194 18 0 24 0 0 1 43
B7ND3_africa_mut 3191 26 1 33 0 2 1 63

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
B-H B-H Y473 S53 Y473 S53 Hydrogen Bonds Hydrogen Bonds 0.37 View
B-H B-H A475 N32 A475 N32 Hydrogen Bonds Hydrogen Bonds 0.83 View
B-H B-H N460 S56 N460 S56 Hydrogen Bonds Hydrogen Bonds 0.15 View
B-H B-H F456 Y33 F456 Y33 Aromatic Stacking Aromatic Stacking 0.48 View
B-H B-H Y421 S53 Y421 S53 Hydrogen Bonds Hydrogen Bonds 0.49 View
B-H B-H F456 Y33 F456 Y33 Hydrophobic Hydrophobic 0.4 View
B-H B-H D420 S56 D420 S56 Hydrogen Bonds Hydrogen Bonds 0.19 View
B-H B-H Y489 L99 Y489 L99 Hydrophobic Hydrophobic 1.52 View
B-H B-H R457 S53 R457 S53 Hydrogen Bonds Hydrogen Bonds 0.26 View
B-H B-H D420 S56 D420 S56 Hydrogen Bonds Hydrogen Bonds 0.27 View
B-H B-H F486 V2 F486 V2 Hydrophobic Hydrophobic 0.91 View
B-H B-H N487 G26 N487 G26 Hydrogen Bonds Hydrogen Bonds 0.32 View
B-H B-H F456 Y33 F456 Y33 Hydrophobic Hydrophobic 0.47 View
B-H B-H F486 V2 F486 V2 Hydrophobic Hydrophobic 0.87 View
B-H B-H Y489 R97 Y489 R97 Hydrogen Bonds Hydrogen Bonds 0.67 View
B-H B-H N460 G54 N460 G54 Hydrogen Bonds Hydrogen Bonds 0.22 View
B-H B-H G476 T28 G476 T28 Hydrogen Bonds Hydrogen Bonds 0.55 View
B-H B-H Y489 R97 Y489 R97 Hydrogen Bonds Hydrogen Bonds 0.82 View
B-H B-H F456 Y33 F456 Y33 Hydrophobic Hydrophobic 0.51 View
B-H B-H R457 S53 R457 S53 Hydrogen Bonds Hydrogen Bonds 0.23 View
B-H B-H F456 Y33 F456 Y33 Hydrophobic Hydrophobic 0.44 View
B-H B-H L455 Y33 L455 Y33 Hydrogen Bonds Hydrogen Bonds 0.64 View
B-H B-H F486 V2 F486 V2 Hydrophobic Hydrophobic 0.62 View
B-H B-H N460 S56 N460 S56 Hydrogen Bonds Hydrogen Bonds 0.25 View
B-H B-H N487 R97 N487 R97 Hydrogen Bonds Hydrogen Bonds 0.7 View
B-H B-H K417 Y52 N417 Y52 Hydrophobic Hydrophobic 1.07 View
B-H B-H Y489 L99 Y489 L99 Hydrophobic Hydrophobic 1.21 View
B-H B-H F456 Y33 F456 Y33 Hydrophobic Hydrophobic 0.46 View
B-H B-H N487 R97 N487 R97 Hydrogen Bonds Hydrogen Bonds 0.55 View
B-H B-H Y473 R31 Y473 R31 Hydrophobic Hydrophobic 0.25 View
B-H B-H F486 V2 F486 V2 Hydrophobic Hydrophobic 0.73 View
B-H B-H Y473 R31 Y473 R31 Hydrogen Bonds Hydrogen Bonds 0.59 View
B-H B-H Y421 S53 Y421 S53 Hydrogen Bonds Hydrogen Bonds 0.46 View
B-H B-H Y421 Y52 Y421 Y52 Hydrophobic Hydrophobic 1.05 View
B-H B-H L455 Y33 L455 Y33 Hydrophobic Hydrophobic 0.32 View
B-H B-H R457 G54 R457 G54 Hydrogen Bonds Hydrogen Bonds 0.26 View
B-H B-H S477 T28 S477 T28 Hydrogen Bonds Hydrogen Bonds 0.41 View
B-H B-H F456 Y33 F456 Y33 Hydrophobic Hydrophobic 0.49 View
B-H B-H F456 Y33 F456 Y33 Hydrophobic Hydrophobic 0.49 View
B-H B-H Y421 G54 Y421 G54 Hydrogen Bonds Hydrogen Bonds 0.52 View
B-H B-H A475 T28 A475 T28 Hydrogen Bonds Hydrogen Bonds 0.54 View
B-H B-H K417 Y52 N417 Y52 Hydrogen Bonds Hydrogen Bonds 0.49 View
B-H B-H F486 V2 F486 V2 Hydrophobic Hydrophobic 0.79 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7ND3 | 7ND3_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7ND3_africa_mut B-H N417 Y33 Hydrogen Bonds 3.12 View
7ND3_africa_mut B-H Y421 Y33 Hydrogen Bonds 3.27 View
7ND3_africa_mut B-H Y421 Y52 Hydrophobic 4.46 View
7ND3_africa_mut B-H Y421 Y52 Hydrophobic 4.48 View
7ND3_africa_mut B-H Y421 Y52 Hydrophobic 4.09 View
7ND3_africa_mut B-H F456 L99 Hydrophobic 4.45 View
7ND3_africa_mut B-H K458 R31 Repulsive 5.66 View
7ND3_africa_mut B-H K458 R31 Repulsive 4.64 View
7ND3_africa_mut B-H E471 R31 Attractive 5.45 View
7ND3_africa_mut B-H Y473 R31 Hydrophobic 4.41 View
7ND3_africa_mut B-H Y473 R31 Hydrophobic 4.27 View
7ND3_africa_mut B-H Y473 R31 Hydrophobic 3.37 View
7ND3_africa_mut B-H Y473 R31 Hydrogen Bonds 3.78 View
7ND3_africa_mut B-H Q474 R31 Hydrogen Bonds 3.73 View
7ND3_africa_mut B-H Q474 R31 Hydrogen Bonds 2.81 View
7ND3_africa_mut B-H Q474 R31 Hydrogen Bonds 3.43 View
7ND3_africa_mut B-H A475 T28 Hydrogen Bonds 3.70 View
7ND3_africa_mut B-H Y489 R97 Hydrogen Bonds 3.88 View
7ND3_africa_mut B-H Y489 L99 Hydrophobic 4.46 View
7ND3_africa_mut B-H Y489 D107 Hydrogen Bonds 3.87 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph