VTR

6 main matches found (35 matches in total )

Execution time: 20.0 seconds

Match RMSD = 0.93

VTR = 0.06

Average AVD = 0.84 Å

Parameters

Chains(7M6I.pdb ): A versus M

Chains(7M6I_africa_mut.pdb ) A versus M

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7M6I 3428 35 0 5 0 0 2 42
B7M6I_africa_mut 3419 43 0 7 0 0 1 51

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
A-M A-M F490 Y97 F490 Y97 Aromatic Stacking Aromatic Stacking 0.6 View
A-M A-M F490 Y97 F490 Y97 Hydrophobic Hydrophobic 0.44 View
A-M A-M Y489 Y99 Y489 Y99 Hydrophobic Hydrophobic 1.97 View
A-M A-M F490 I52 F490 I52 Hydrophobic Hydrophobic 0.61 View
A-M A-M Y489 Y99 Y489 Y99 Hydrophobic Hydrophobic 1.48 View
A-M A-M S494 Y98 S494 Y98 Hydrogen Bonds Hydrogen Bonds 0.75 View
A-M A-M Y449 S30 Y449 S30 Hydrogen Bonds Hydrogen Bonds 1.09 View
A-M A-M L452 M53 L452 M53 Hydrophobic Hydrophobic 1.34 View
A-M A-M F490 I52 F490 I52 Hydrophobic Hydrophobic 0.58 View
A-M A-M F490 Y97 F490 Y97 Hydrophobic Hydrophobic 0.83 View
A-M A-M F490 Y97 F490 Y97 Hydrophobic Hydrophobic 0.44 View
A-M A-M F490 Y97 F490 Y97 Hydrophobic Hydrophobic 0.44 View
A-M A-M F490 Y97 F490 Y97 Hydrophobic Hydrophobic 0.66 View
A-M A-M F490 Y97 F490 Y97 Hydrophobic Hydrophobic 0.65 View
A-M A-M F490 Y97 F490 Y97 Hydrophobic Hydrophobic 0.52 View
A-M A-M F490 Y97 F490 Y97 Hydrophobic Hydrophobic 0.67 View
A-M A-M T470 F54 T470 F54 Hydrophobic Hydrophobic 0.7 View
A-M A-M F490 Y97 F490 Y97 Hydrophobic Hydrophobic 0.84 View
A-M A-M T470 F54 T470 F54 Hydrophobic Hydrophobic 0.39 View
A-M A-M Y449 F29 Y449 F29 Hydrogen Bonds Hydrogen Bonds 1.11 View
A-M A-M Y351 M53 Y351 M53 Hydrophobic Hydrophobic 0.65 View
A-M A-M F490 Y97 F490 Y97 Hydrophobic Hydrophobic 0.79 View
A-M A-M L492 M53 L492 M53 Hydrophobic Hydrophobic 0.84 View
A-M A-M Y489 Y99 Y489 Y99 Hydrophobic Hydrophobic 1.04 View
A-M A-M Y473 R50 Y473 R50 Hydrogen Bonds Hydrogen Bonds 0.81 View
A-M A-M Y473 R50 Y473 R50 Hydrogen Bonds Hydrogen Bonds 0.94 View
A-M A-M F490 I52 F490 I52 Hydrophobic Hydrophobic 0.49 View
A-M A-M L452 M53 L452 M53 Hydrophobic Hydrophobic 1.17 View
A-M A-M F490 Y97 F490 Y97 Hydrophobic Hydrophobic 0.53 View
A-M A-M T470 F54 T470 F54 Hydrophobic Hydrophobic 0.42 View
A-M A-M Y489 Y99 Y489 Y99 Hydrophobic Hydrophobic 1.44 View
A-M A-M Y489 Y99 Y489 Y99 Hydrophobic Hydrophobic 1.95 View
A-M A-M Q493 Y98 Q493 Y98 Hydrophobic Hydrophobic 0.86 View
A-M A-M F490 Y97 F490 Y97 Hydrophobic Hydrophobic 0.78 View
A-M A-M Y351 M53 Y351 M53 Hydrophobic Hydrophobic 0.58 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7M6I | 7M6I_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7M6I A-M Y489 Y99 Hydrophobic 3.65 View
7M6I A-M Y489 Y99 Hydrophobic 4.06 View
7M6I A-M Y489 Y99 Hydrophobic 4.44 View
7M6I A-M Y489 Y99 Aromatic Stacking 5.52 View
7M6I A-M Y489 Y99 Hydrophobic 3.83 View
7M6I A-M Y489 Y99 Hydrophobic 4.44 View
7M6I A-M Y489 Y99 Hydrophobic 3.72 View
7M6I_africa_mut A-M V483 Y99 Hydrophobic 3.99 View
7M6I_africa_mut A-M C488 Y99 Hydrogen Bonds 3.44 View
7M6I_africa_mut A-M Y489 Y99 Hydrophobic 4.48 View
7M6I_africa_mut A-M F490 Y97 Hydrophobic 4.23 View
7M6I_africa_mut A-M F490 Y97 Hydrophobic 3.92 View
7M6I_africa_mut A-M F490 Y97 Hydrophobic 4.27 View
7M6I_africa_mut A-M F490 Y97 Hydrophobic 4.17 View
7M6I_africa_mut A-M F490 Y97 Hydrophobic 3.97 View
7M6I_africa_mut A-M F490 Y97 Hydrophobic 4.18 View
7M6I_africa_mut A-M F490 Y97 Hydrophobic 4.45 View
7M6I_africa_mut A-M F490 Y97 Hydrophobic 4.38 View
7M6I_africa_mut A-M Q493 Y98 Hydrophobic 3.99 View
7M6I_africa_mut A-M Q493 Y98 Hydrophobic 4.27 View
7M6I_africa_mut A-M Q493 Y98 Hydrophobic 3.29 View
7M6I_africa_mut A-M Q493 Y98 Hydrophobic 3.91 View
7M6I_africa_mut A-M S494 Y98 Hydrogen Bonds 3.88 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph