VTR

17 main matches found (20 matches in total )

Execution time: 17.0 seconds

Match RMSD = 0.64

VTR = 0.03

Average AVD = 0.58 Å

Parameters

Chains(7M6H.pdb ): C versus F

Chains(7M6H_africa_mut.pdb ) C versus F

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7M6H 3440 3 0 17 0 3 0 23
B7M6H_africa_mut 3431 4 0 20 0 1 0 25

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
C-F C-F R408 A74 R408 A74 Hydrophobic Hydrophobic 0.33 View
C-F C-F R408 I21 R408 I21 Hydrogen Bonds Hydrogen Bonds 0.48 View
C-F C-F Q414 S63 Q414 S63 Hydrogen Bonds Hydrogen Bonds 0.18 View
C-F C-F T376 Y31 T376 Y31 Hydrogen Bonds Hydrogen Bonds 0.9 View
C-F C-F R408 L73 R408 L73 Hydrogen Bonds Hydrogen Bonds 0.53 View
C-F C-F S375 Y31 S375 Y31 Hydrogen Bonds Hydrogen Bonds 0.93 View
C-F C-F Y508 S67 Y508 S67 Hydrogen Bonds Hydrogen Bonds 0.38 View
C-F C-F Y505 R18 Y505 R18 Hydrogen Bonds Hydrogen Bonds 1.0 View
C-F C-F Q506 S67 Q506 S67 Hydrogen Bonds Hydrogen Bonds 0.71 View
C-F C-F T415 T76 T415 T76 Hydrophobic Hydrophobic 0.18 View
C-F C-F R408 T20 R408 T20 Hydrogen Bonds Hydrogen Bonds 0.39 View
C-F C-F R408 S22 R408 S22 Hydrogen Bonds Hydrogen Bonds 0.92 View
C-F C-F Y508 G68 Y508 G68 Hydrogen Bonds Hydrogen Bonds 0.28 View
C-F C-F Y508 S67 Y508 S67 Hydrogen Bonds Hydrogen Bonds 0.52 View
C-F C-F R408 S63 R408 S63 Hydrogen Bonds Hydrogen Bonds 0.57 View
C-F C-F R408 S72 R408 S72 Hydrogen Bonds Hydrogen Bonds 1.02 View
C-F C-F Q506 S67 Q506 S67 Hydrogen Bonds Hydrogen Bonds 0.68 View
C-F C-F R408 S22 R408 S22 Hydrogen Bonds Hydrogen Bonds 0.58 View
C-F C-F T376 Y31 T376 Y31 Hydrophobic Hydrophobic 0.65 View
C-F C-F G504 T20 G504 T20 Hydrogen Bonds Hydrogen Bonds 0.43 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7M6H | 7M6H_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7M6H C-F K417 R18 Repulsive 4.92 View
7M6H C-F K417 R18 Repulsive 5.19 View
7M6H C-F K417 R18 Repulsive 4.55 View
7M6H_africa_mut C-F R408 R18 Repulsive 5.85 View
7M6H_africa_mut C-F R408 T20 Hydrogen Bonds 3.47 View
7M6H_africa_mut C-F R408 S72 Hydrogen Bonds 3.70 View
7M6H_africa_mut C-F R408 A74 Hydrophobic 4.29 View
7M6H_africa_mut C-F Q414 S63 Hydrogen Bonds 3.77 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph