VTR

1 main matches found (5 matches in total )

Execution time: 16.0 seconds

Match RMSD = 0.94

VTR = 0.17

Average AVD = 0.91 Å

Parameters

Chains(7M6F.pdb ): E versus C

Chains(7M6F_africa_mut.pdb ) E versus C

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7M6F 3426 4 0 2 0 0 0 6
B7M6F_africa_mut 3420 32 0 12 0 0 1 45

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
C-E C-E P53 Y421 P53 Y421 Hydrophobic Hydrophobic 0.75 View
C-E C-E P53 Y421 P53 Y421 Hydrophobic Hydrophobic 0.78 View
C-E C-E G54 Y421 G54 Y421 Hydrogen Bonds Hydrogen Bonds 1.14 View
C-E C-E P53 Y421 P53 Y421 Hydrophobic Hydrophobic 1.23 View
C-E C-E P53 Y421 P53 Y421 Hydrophobic Hydrophobic 0.65 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7M6F | 7M6F_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7M6F C-E P53 Y421 Hydrogen Bonds 3.63 View
7M6F_africa_mut C-E V2 F486 Hydrophobic 4.30 View
7M6F_africa_mut C-E V2 F486 Hydrophobic 4.41 View
7M6F_africa_mut C-E V2 F486 Hydrophobic 3.91 View
7M6F_africa_mut C-E V2 F486 Hydrophobic 4.33 View
7M6F_africa_mut C-E V2 F486 Hydrophobic 4.00 View
7M6F_africa_mut C-E V2 F486 Hydrophobic 4.46 View
7M6F_africa_mut C-E V2 F486 Hydrophobic 4.36 View
7M6F_africa_mut C-E V2 F486 Hydrophobic 3.88 View
7M6F_africa_mut C-E V2 F486 Hydrophobic 3.66 View
7M6F_africa_mut C-E V2 F486 Hydrophobic 3.08 View
7M6F_africa_mut C-E V2 F486 Hydrophobic 2.94 View
7M6F_africa_mut C-E F27 A475 Hydrophobic 3.50 View
7M6F_africa_mut C-E F27 A475 Hydrophobic 3.15 View
7M6F_africa_mut C-E F27 A475 Hydrophobic 4.24 View
7M6F_africa_mut C-E F27 F486 Hydrophobic 3.86 View
7M6F_africa_mut C-E S31 Y421 Hydrogen Bonds 3.59 View
7M6F_africa_mut C-E S31 R457 Hydrogen Bonds 3.55 View
7M6F_africa_mut C-E S31 K458 Hydrogen Bonds 2.78 View
7M6F_africa_mut C-E S31 Y473 Hydrogen Bonds 3.39 View
7M6F_africa_mut C-E S31 Y473 Hydrogen Bonds 3.77 View
7M6F_africa_mut C-E Y52 G416 Hydrogen Bonds 3.89 View
7M6F_africa_mut C-E Y52 N417 Hydrophobic 4.49 View
7M6F_africa_mut C-E Y52 N417 Hydrogen Bonds 3.35 View
7M6F_africa_mut C-E Y52 D420 Hydrophobic 3.96 View
7M6F_africa_mut C-E Y52 D420 Hydrophobic 3.90 View
7M6F_africa_mut C-E Y52 D420 Hydrophobic 3.01 View
7M6F_africa_mut C-E Y52 D420 Hydrogen Bonds 2.94 View
7M6F_africa_mut C-E Y52 Y421 Aromatic Stacking 4.74 View
7M6F_africa_mut C-E Y52 Y421 Hydrophobic 3.89 View
7M6F_africa_mut C-E Y52 Y421 Hydrophobic 3.78 View
7M6F_africa_mut C-E Y52 Y421 Hydrophobic 4.47 View
7M6F_africa_mut C-E Y52 Y421 Hydrophobic 4.30 View
7M6F_africa_mut C-E Y52 Y421 Hydrogen Bonds 2.76 View
7M6F_africa_mut C-E P53 F456 Hydrophobic 4.44 View
7M6F_africa_mut C-E S56 T415 Hydrogen Bonds 2.71 View
7M6F_africa_mut C-E F58 T415 Hydrophobic 4.35 View
7M6F_africa_mut C-E P97 Y489 Hydrophobic 4.22 View
7M6F_africa_mut C-E P97 Y489 Hydrophobic 4.49 View
7M6F_africa_mut C-E P97 Y489 Hydrogen Bonds 3.68 View
7M6F_africa_mut C-E D102 L455 Hydrophobic 4.20 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph