VTR

3 main matches found (11 matches in total )

Execution time: 17.0 seconds

Match RMSD = 1.01

VTR = 0.19

Average AVD = 0.95 Å

Parameters

Chains(7M6F.pdb ): A versus H

Chains(7M6F_africa_mut.pdb ) A versus H

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7M6F 3426 8 0 3 0 0 0 11
B7M6F_africa_mut 3420 45 0 18 0 0 1 64

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
A-H A-H Y421 P53 Y421 P53 Hydrophobic Hydrophobic 0.72 View
A-H A-H Y421 Y52 Y421 Y52 Hydrophobic Hydrophobic 1.28 View
A-H A-H Y421 P53 Y421 P53 Hydrophobic Hydrophobic 0.93 View
A-H A-H Y421 P53 Y421 P53 Hydrophobic Hydrophobic 0.84 View
A-H A-H Y421 P53 Y421 P53 Hydrophobic Hydrophobic 0.84 View
A-H A-H N487 F27 N487 F27 Hydrophobic Hydrophobic 0.9 View
A-H A-H Y421 P53 Y421 P53 Hydrophobic Hydrophobic 1.68 View
A-H A-H Y421 P53 Y421 P53 Hydrogen Bonds Hydrogen Bonds 0.96 View
A-H A-H A475 T28 A475 T28 Hydrogen Bonds Hydrogen Bonds 0.32 View
A-H A-H Y421 P53 Y421 P53 Hydrophobic Hydrophobic 1.0 View
A-H A-H Y421 G54 Y421 G54 Hydrogen Bonds Hydrogen Bonds 1.02 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7M6F | 7M6F_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7M6F_africa_mut A-H T415 S56 Hydrogen Bonds 2.89 View
7M6F_africa_mut A-H G416 Y52 Hydrogen Bonds 3.38 View
7M6F_africa_mut A-H N417 Y52 Hydrophobic 4.02 View
7M6F_africa_mut A-H N417 Y52 Hydrogen Bonds 3.63 View
7M6F_africa_mut A-H N417 Y52 Hydrogen Bonds 2.58 View
7M6F_africa_mut A-H N417 R96 Hydrogen Bonds 3.77 View
7M6F_africa_mut A-H D420 Y52 Hydrogen Bonds 3.76 View
7M6F_africa_mut A-H D420 Y52 Hydrophobic 3.90 View
7M6F_africa_mut A-H D420 Y52 Hydrophobic 4.01 View
7M6F_africa_mut A-H D420 Y52 Hydrophobic 2.92 View
7M6F_africa_mut A-H D420 Y52 Hydrogen Bonds 3.67 View
7M6F_africa_mut A-H Y421 S31 Hydrogen Bonds 3.15 View
7M6F_africa_mut A-H Y421 Y52 Hydrogen Bonds 2.63 View
7M6F_africa_mut A-H Y421 Y52 Aromatic Stacking 4.62 View
7M6F_africa_mut A-H Y421 Y52 Hydrophobic 4.49 View
7M6F_africa_mut A-H Y421 Y52 Hydrophobic 4.12 View
7M6F_africa_mut A-H Y421 Y52 Hydrophobic 4.19 View
7M6F_africa_mut A-H Y421 Y52 Hydrophobic 4.13 View
7M6F_africa_mut A-H Y421 Y52 Hydrophobic 4.14 View
7M6F_africa_mut A-H Y421 Y52 Hydrophobic 3.77 View
7M6F_africa_mut A-H R457 S31 Hydrogen Bonds 2.59 View
7M6F_africa_mut A-H K458 S31 Hydrogen Bonds 3.84 View
7M6F_africa_mut A-H A475 F27 Hydrophobic 4.40 View
7M6F_africa_mut A-H A475 F27 Hydrophobic 3.06 View
7M6F_africa_mut A-H A475 F27 Hydrophobic 2.94 View
7M6F_africa_mut A-H A475 F27 Hydrophobic 4.23 View
7M6F_africa_mut A-H F486 V2 Hydrophobic 4.32 View
7M6F_africa_mut A-H F486 V2 Hydrophobic 4.46 View
7M6F_africa_mut A-H F486 V2 Hydrophobic 4.42 View
7M6F_africa_mut A-H F486 V2 Hydrophobic 3.46 View
7M6F_africa_mut A-H F486 V2 Hydrophobic 4.31 View
7M6F_africa_mut A-H F486 V2 Hydrophobic 3.85 View
7M6F_africa_mut A-H F486 V2 Hydrophobic 3.76 View
7M6F_africa_mut A-H F486 V2 Hydrophobic 4.21 View
7M6F_africa_mut A-H F486 V2 Hydrophobic 4.30 View
7M6F_africa_mut A-H F486 V2 Hydrophobic 3.05 View
7M6F_africa_mut A-H F486 V2 Hydrophobic 3.93 View
7M6F_africa_mut A-H F486 V2 Hydrophobic 3.07 View
7M6F_africa_mut A-H F486 V2 Hydrophobic 3.72 View
7M6F_africa_mut A-H F486 V2 Hydrophobic 3.83 View
7M6F_africa_mut A-H F486 V2 Hydrophobic 3.63 View
7M6F_africa_mut A-H F486 V2 Hydrophobic 3.01 View
7M6F_africa_mut A-H F486 V2 Hydrophobic 3.68 View
7M6F_africa_mut A-H F486 V2 Hydrophobic 2.95 View
7M6F_africa_mut A-H F486 V2 Hydrophobic 3.37 View
7M6F_africa_mut A-H F486 F27 Hydrophobic 4.21 View
7M6F_africa_mut A-H F486 F27 Hydrophobic 4.04 View
7M6F_africa_mut A-H F486 F27 Hydrophobic 3.40 View
7M6F_africa_mut A-H N487 G26 Hydrogen Bonds 2.66 View
7M6F_africa_mut A-H Y489 P97 Hydrophobic 4.47 View
7M6F_africa_mut A-H Y489 D102 Hydrogen Bonds 3.85 View
7M6F_africa_mut A-H Y489 D102 Hydrogen Bonds 3.29 View
7M6F_africa_mut A-H Q493 D102 Hydrogen Bonds 2.75 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph