VTR

23 main matches found (44 matches in total )

Execution time: 17.0 seconds

Match RMSD = 0.95

VTR = 0.05

Average AVD = 0.87 Å

Parameters

Chains(7M6E.pdb ): E versus D

Chains(7M6E_africa_mut.pdb ) E versus D

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7M6E 3747 28 12 11 0 2 1 54
B7M6E_africa_mut 3741 24 12 15 0 3 1 55

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
D-E D-E R58 R346 R58 R346 Repulsive Repulsive 0.61 View
D-E D-E T57 K444 T57 K444 Hydrogen Bonds Hydrogen Bonds 0.51 View
D-E D-E W33 T345 W33 T345 Hydrophobic Hydrophobic 0.83 View
D-E D-E W97 L441 W97 L441 Hydrophobic Hydrophobic 0.93 View
D-E D-E W97 L441 W97 L441 Hydrophobic Hydrophobic 0.69 View
D-E D-E Y52 T345 Y52 T345 Hydrogen Bonds Hydrogen Bonds 0.48 View
D-E D-E W33 T345 W33 T345 Hydrophobic Hydrophobic 0.85 View
D-E D-E R58 K444 R58 K444 Hydrophobic Hydrophobic 0.48 View
D-E D-E W97 L441 W97 L441 Hydrophobic Hydrophobic 0.52 View
D-E D-E Y99 F342 Y99 F342 Hydrogen Bonds Hydrogen Bonds 1.86 View
D-E D-E W97 L441 W97 L441 Hydrophobic Hydrophobic 0.56 View
D-E D-E D54 R346 D54 R346 Attractive Attractive 0.87 View
D-E D-E W97 L441 W97 L441 Hydrophobic Hydrophobic 1.05 View
D-E D-E R58 K444 R58 K444 Repulsive Repulsive 0.69 View
D-E D-E Y52 R346 Y52 R346 Hydrophobic Hydrophobic 0.67 View
D-E D-E R58 D442 R58 D442 Attractive Attractive 0.53 View
D-E D-E D54 R346 D54 R346 Attractive Attractive 0.72 View
D-E D-E W97 L441 W97 L441 Hydrophobic Hydrophobic 0.7 View
D-E D-E R58 N448 R58 N448 Hydrogen Bonds Hydrogen Bonds 0.55 View
D-E D-E Y52 R346 Y52 R346 Hydrophobic Hydrophobic 0.66 View
D-E D-E W97 L441 W97 L441 Hydrophobic Hydrophobic 0.88 View
D-E D-E W97 L441 W97 L441 Hydrophobic Hydrophobic 1.34 View
D-E D-E W97 L441 W97 L441 Hydrophobic Hydrophobic 0.53 View
D-E D-E Y99 W436 Y99 W436 Hydrophobic Hydrophobic 0.91 View
D-E D-E D56 R346 D56 R346 Attractive Attractive 0.69 View
D-E D-E W33 T345 W33 T345 Hydrophobic Hydrophobic 0.86 View
D-E D-E D54 R346 D54 R346 Attractive Attractive 0.83 View
D-E D-E R58 N448 R58 N448 Hydrogen Bonds Hydrogen Bonds 0.55 View
D-E D-E Y99 W436 Y99 W436 Hydrophobic Hydrophobic 1.61 View
D-E D-E T57 K444 T57 K444 Hydrogen Bonds Hydrogen Bonds 0.47 View
D-E D-E W97 L441 W97 L441 Hydrophobic Hydrophobic 1.39 View
D-E D-E D56 N448 D56 N448 Hydrogen Bonds Hydrogen Bonds 0.83 View
D-E D-E Y99 N440 Y99 N440 Hydrogen Bonds Hydrogen Bonds 1.8 View
D-E D-E D56 R346 D56 R346 Attractive Attractive 0.57 View
D-E D-E D54 R346 D54 R346 Attractive Attractive 0.79 View
D-E D-E D56 R346 D56 R346 Attractive Attractive 0.6 View
D-E D-E Y99 W436 Y99 W436 Hydrophobic Hydrophobic 1.69 View
D-E D-E R58 L441 R58 L441 Hydrogen Bonds Hydrogen Bonds 0.73 View
D-E D-E D54 R346 D54 R346 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.76 View
D-E D-E W97 L441 W97 L441 Hydrophobic Hydrophobic 1.43 View
D-E D-E D56 K444 D56 K444 Attractive Attractive 0.71 View
D-E D-E Y99 W436 Y99 W436 Aromatic Stacking Hydrogen Bonds 1.42 View
D-E D-E D54 R346 D54 R346 Attractive Attractive 0.75 View
D-E D-E Y99 L441 Y99 L441 Hydrophobic Hydrophobic 1.32 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7M6E | 7M6E_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7M6E D-E D56 R346 Attractive 5.92 View
7M6E D-E W97 L441 Hydrophobic 3.42 View
7M6E D-E Y99 W436 Hydrophobic 4.41 View
7M6E D-E Y99 W436 Hydrophobic 4.44 View
7M6E D-E Y99 W436 Hydrophobic 3.89 View
7M6E D-E Y99 N437 Hydrogen Bonds 3.60 View
7M6E D-E Y99 L441 Hydrophobic 3.71 View
7M6E D-E Y99 L441 Hydrophobic 4.04 View
7M6E D-E Y99 L441 Hydrophobic 3.42 View
7M6E_africa_mut D-E D54 R346 Attractive 5.32 View
7M6E_africa_mut D-E D56 N448 Hydrogen Bonds 3.88 View
7M6E_africa_mut D-E D56 N450 Hydrogen Bonds 3.77 View
7M6E_africa_mut D-E R58 D442 Hydrogen Bonds 2.65 View
7M6E_africa_mut D-E R58 K444 Hydrophobic 4.36 View
7M6E_africa_mut D-E R58 K444 Repulsive 5.71 View
7M6E_africa_mut D-E Q96 T345 Hydrophobic 4.23 View
7M6E_africa_mut D-E Q96 T345 Hydrophobic 4.39 View
7M6E_africa_mut D-E G98 N343 Hydrogen Bonds 3.79 View
7M6E_africa_mut D-E Y99 W436 Aromatic Stacking 5.55 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph