VTR

21 main matches found (37 matches in total )

Execution time: 20.0 seconds

Match RMSD = 0.89

VTR = 0.06

Average AVD = 0.77 Å

Parameters

Chains(7M6E.pdb ): B versus F

Chains(7M6E_africa_mut.pdb ) B versus F

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7M6E 3747 20 9 15 0 2 1 47
B7M6E_africa_mut 3741 19 12 16 0 4 1 52

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
B-F B-F W436 Y99 W436 Y99 Hydrophobic Hydrophobic 1.75 View
B-F B-F L441 Y99 L441 Y99 Hydrophobic Hydrophobic 1.49 View
B-F B-F L441 W97 L441 W97 Hydrophobic Hydrophobic 1.68 View
B-F B-F L441 W97 L441 W97 Hydrophobic Hydrophobic 0.65 View
B-F B-F R346 D54 R346 D54 Attractive Attractive 0.69 View
B-F B-F T345 Y52 T345 Y52 Hydrogen Bonds Hydrogen Bonds 0.49 View
B-F B-F K444 R58 K444 R58 Hydrophobic Hydrophobic 0.46 View
B-F B-F R346 R58 R346 R58 Repulsive Repulsive 0.24 View
B-F B-F R346 Y52 R346 Y52 Hydrophobic Hydrophobic 0.65 View
B-F B-F N440 Y99 N440 Y99 Hydrogen Bonds Hydrogen Bonds 1.89 View
B-F B-F R346 D56 R346 D56 Attractive Attractive 0.42 View
B-F B-F R346 D56 R346 D56 Attractive Attractive 0.49 View
B-F B-F L441 W97 L441 W97 Hydrophobic Hydrophobic 0.53 View
B-F B-F L441 Y99 L441 Y99 Hydrophobic Hydrophobic 0.99 View
B-F B-F L441 W97 L441 W97 Hydrophobic Hydrophobic 0.47 View
B-F B-F L441 W97 L441 W97 Hydrophobic Hydrophobic 1.08 View
B-F B-F T345 S31 T345 S31 Hydrogen Bonds Hydrogen Bonds 0.63 View
B-F B-F K444 T57 K444 T57 Hydrogen Bonds Hydrogen Bonds 0.4 View
B-F B-F R346 D54 R346 D54 Attractive Attractive 0.71 View
B-F B-F R346 D54 R346 D54 Attractive Attractive 0.72 View
B-F B-F R346 D54 R346 D54 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.82 View
B-F B-F K444 T57 K444 T57 Hydrogen Bonds Hydrogen Bonds 0.43 View
B-F B-F L441 W97 L441 W97 Hydrophobic Hydrophobic 0.81 View
B-F B-F N448 R58 N448 R58 Hydrogen Bonds Hydrogen Bonds 0.4 View
B-F B-F L441 R58 L441 R58 Hydrogen Bonds Hydrogen Bonds 0.61 View
B-F B-F L441 Y99 L441 Y99 Hydrophobic Hydrophobic 1.61 View
B-F B-F L441 W97 L441 W97 Hydrophobic Hydrophobic 0.95 View
B-F B-F D442 R58 D442 R58 Attractive Attractive 0.37 View
B-F B-F W436 Y99 W436 Y99 Aromatic Stacking 1.55 View
B-F B-F N448 D56 N448 D56 Hydrogen Bonds Hydrogen Bonds 0.81 View
B-F B-F K444 R58 K444 R58 Repulsive Repulsive 0.53 View
B-F B-F L441 W97 L441 W97 Hydrophobic Hydrophobic 0.5 View
B-F B-F R346 D56 R346 D56 Attractive Attractive 0.6 View
B-F B-F R346 Y52 R346 Y52 Hydrophobic Hydrophobic 0.62 View
B-F B-F L441 W97 L441 W97 Hydrophobic Hydrophobic 0.61 View
B-F B-F N448 R58 N448 R58 Hydrogen Bonds Hydrogen Bonds 0.41 View
B-F B-F K444 D56 K444 D56 Attractive Attractive 0.63 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7M6E | 7M6E_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7M6E B-F F342 Y99 Hydrogen Bonds 3.71 View
7M6E B-F N343 Y99 Hydrogen Bonds 3.73 View
7M6E B-F N343 N100 Hydrogen Bonds 3.28 View
7M6E B-F N343 N100 Hydrogen Bonds 3.43 View
7M6E B-F W436 Y99 Hydrophobic 4.48 View
7M6E B-F W436 Y99 Hydrophobic 3.93 View
7M6E B-F W436 Y99 Hydrophobic 4.13 View
7M6E B-F N437 Y99 Hydrogen Bonds 3.57 View
7M6E B-F L441 Y99 Hydrophobic 4.02 View
7M6E_africa_mut B-F N343 Y99 Hydrogen Bonds 3.28 View
7M6E_africa_mut B-F N343 Y99 Hydrogen Bonds 2.71 View
7M6E_africa_mut B-F R346 D54 Attractive 5.63 View
7M6E_africa_mut B-F R346 D54 Attractive 5.52 View
7M6E_africa_mut B-F R346 D54 Attractive 5.01 View
7M6E_africa_mut B-F R346 R58 Repulsive 5.95 View
7M6E_africa_mut B-F W436 Y99 Aromatic Stacking 5.91 View
7M6E_africa_mut B-F W436 Y99 Hydrogen Bonds 3.36 View
7M6E_africa_mut B-F L441 W97 Hydrophobic 4.23 View
7M6E_africa_mut B-F L441 W97 Hydrophobic 3.96 View
7M6E_africa_mut B-F L441 W97 Hydrophobic 4.00 View
7M6E_africa_mut B-F D442 R58 Hydrogen Bonds 2.95 View
7M6E_africa_mut B-F K444 R58 Repulsive 5.97 View
7M6E_africa_mut B-F N448 D56 Hydrogen Bonds 3.87 View
7M6E_africa_mut B-F N450 D56 Hydrogen Bonds 3.60 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph