VTR

9 main matches found (32 matches in total )

Execution time: 8.0 seconds

Match RMSD = 0.45

VTR = 0.01

Average AVD = 0.43 Å

Parameters

Chains(7M3I.pdb ): R versus H

Chains(7M3I_africa_mut.pdb ) R versus H

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7M3I 1280 23 2 8 0 0 0 33
B7M3I_africa_mut 1280 26 2 9 0 0 0 37

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
H-R H-R Y53 V503 Y53 V503 Hydrophobic Hydrophobic 0.43 View
H-R H-R D102 K378 D102 K378 Attractive Attractive 0.39 View
H-R H-R L105 F377 L105 F377 Hydrophobic Hydrophobic 0.61 View
H-R H-R Y52 V503 Y52 V503 Hydrophobic Hydrophobic 0.45 View
H-R H-R D102 F377 D102 F377 Hydrogen Bonds Hydrogen Bonds 0.13 View
H-R H-R Y53 V503 Y53 V503 Hydrophobic Hydrophobic 0.4 View
H-R H-R P101 F374 P101 F374 Hydrophobic Hydrophobic 0.31 View
H-R H-R L105 P384 L105 P384 Hydrophobic Hydrophobic 0.38 View
H-R H-R Y53 V503 Y53 V503 Hydrophobic Hydrophobic 0.47 View
H-R H-R L105 F377 L105 F377 Hydrophobic Hydrophobic 0.55 View
H-R H-R D102 K378 D102 K378 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.38 View
H-R H-R P101 F377 P101 F377 Hydrophobic Hydrophobic 0.19 View
H-R H-R Y33 S375 Y33 S375 Hydrogen Bonds Hydrogen Bonds 0.31 View
H-R H-R Y33 T376 Y33 T376 Hydrogen Bonds Hydrogen Bonds 0.19 View
H-R H-R L105 P384 L105 P384 Hydrophobic Hydrophobic 0.44 View
H-R H-R L105 F377 L105 F377 Hydrophobic Hydrophobic 0.65 View
H-R H-R L105 F377 L105 F377 Hydrophobic Hydrophobic 0.67 View
H-R H-R Y53 V503 Y53 V503 Hydrophobic Hydrophobic 0.34 View
H-R H-R Y53 N437 Y53 N437 Hydrogen Bonds Hydrogen Bonds 0.48 View
H-R H-R D102 S375 D102 S375 Hydrogen Bonds Hydrogen Bonds 0.34 View
H-R H-R P101 F377 P101 F377 Hydrophobic Hydrophobic 0.26 View
H-R H-R P101 F374 P101 F374 Hydrophobic Hydrophobic 0.24 View
H-R H-R L105 Y369 L105 Y369 Hydrophobic Hydrophobic 0.84 View
H-R H-R L105 T385 L105 T385 Hydrophobic Hydrophobic 0.51 View
H-R H-R Y53 V503 Y53 V503 Hydrophobic Hydrophobic 0.39 View
H-R H-R N104 C379 N104 C379 Hydrogen Bonds Hydrogen Bonds 0.27 View
H-R H-R Y52 Y508 Y52 Y508 Hydrogen Bonds Hydrogen Bonds 0.37 View
H-R H-R L105 F377 L105 F377 Hydrophobic Hydrophobic 0.6 View
H-R H-R L105 F377 L105 F377 Hydrophobic Hydrophobic 0.48 View
H-R H-R Y53 V503 Y53 V503 Hydrophobic Hydrophobic 0.57 View
H-R H-R N104 P384 N104 P384 Hydrophobic Hydrophobic 0.34 View
H-R H-R L105 F377 L105 F377 Hydrophobic Hydrophobic 0.63 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7M3I | 7M3I_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7M3I_africa_mut H-R Y53 Y508 Hydrogen Bonds 3.61 View
7M3I_africa_mut H-R D102 T376 Hydrophobic 4.37 View
7M3I_africa_mut H-R L105 F377 Hydrophobic 4.49 View
7M3I_africa_mut H-R L105 F377 Hydrophobic 4.46 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph