VTR

9 main matches found (26 matches in total )

Execution time: 19.0 seconds

Match RMSD = 0.52

VTR = 0.01

Average AVD = 0.44 Å

Parameters

Chains(7LY3.pdb ): A versus D

Chains(7LY3_africa_mut.pdb ) A versus D

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7LY3 1429 19 0 9 0 0 0 28
B7LY3_africa_mut 1423 19 0 9 0 0 0 28

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
A-D A-D N17 S56 N17 S56 Hydrogen Bonds Hydrogen Bonds 0.58 View
A-D A-D L18 W52 F18 W52 Hydrophobic Hydrophobic 1.74 View
A-D A-D N17 N57 N17 N57 Hydrogen Bonds Hydrogen Bonds 0.54 View
A-D A-D N17 N57 N17 N57 Hydrogen Bonds Hydrogen Bonds 0.29 View
A-D A-D T250 W104 T250 W104 Hydrophobic Hydrophobic 0.65 View
A-D A-D P251 V50 P251 V50 Hydrophobic Hydrophobic 0.32 View
A-D A-D D253 Y53 D253 Y53 Hydrophobic Hydrophobic 0.32 View
A-D A-D N17 N57 N17 N57 Hydrogen Bonds Hydrogen Bonds 0.29 View
A-D A-D T250 W104 T250 W104 Hydrophobic Hydrophobic 0.53 View
A-D A-D P251 Y53 P251 Y53 Hydrogen Bonds Hydrogen Bonds 0.25 View
A-D A-D P251 V50 P251 V50 Hydrophobic Hydrophobic 0.24 View
A-D A-D P251 A99 P251 A99 Hydrophobic Hydrophobic 0.38 View
A-D A-D P251 G33 P251 G33 Hydrogen Bonds Hydrogen Bonds 0.27 View
A-D A-D T250 W104 T250 W104 Hydrophobic Hydrophobic 0.45 View
A-D A-D D253 Y53 D253 Y53 Hydrophobic Hydrophobic 0.36 View
A-D A-D D253 Y53 D253 Y53 Hydrophobic Hydrophobic 0.33 View
A-D A-D D253 Y53 D253 Y53 Hydrophobic Hydrophobic 0.36 View
A-D A-D N17 S56 N17 S56 Hydrogen Bonds Hydrogen Bonds 0.33 View
A-D A-D P251 W52 P251 W52 Hydrophobic Hydrophobic 0.26 View
A-D A-D L249 W104 L249 W104 Hydrophobic Hydrophobic 0.27 View
A-D A-D T250 W104 T250 W104 Hydrophobic Hydrophobic 0.54 View
A-D A-D D253 Y53 D253 Y53 Hydrophobic Hydrophobic 0.33 View
A-D A-D T250 W104 T250 W104 Hydrophobic Hydrophobic 0.46 View
A-D A-D D253 S31 D253 S31 Hydrogen Bonds Hydrogen Bonds 0.25 View
A-D A-D D253 S31 D253 S31 Hydrogen Bonds Hydrogen Bonds 0.69 View
A-D A-D D253 Y53 D253 Y53 Hydrophobic Hydrophobic 0.34 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7LY3 | 7LY3_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7LY3 A-D R246 W104 Hydrophobic 3.64 View
7LY3 A-D R246 W104 Hydrophobic 4.49 View
7LY3_africa_mut A-D F18 W52 Hydrophobic 4.25 View
7LY3_africa_mut A-D F18 W52 Hydrophobic 4.35 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph