VTR

12 main matches found (27 matches in total )

Execution time: 3.0 seconds

Match RMSD = 0.85

VTR = 0.08

Average AVD = 0.81 Å

Parameters

Chains(7LY0.pdb ): A versus L

Chains(7LY0_africa_mut.pdb ) A versus L

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7LY0 354 15 4 17 0 8 1 45
B7LY0_africa_mut 351 21 3 13 0 0 1 38

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
A-L A-L K147 Y31 K147 Y31 Hydrophobic Hydrophobic 1.0 View
A-L A-L K147 Y31 K147 Y31 Hydrophobic Hydrophobic 0.76 View
A-L A-L N148 G67 N148 G67 Hydrogen Bonds Hydrogen Bonds 0.82 View
A-L A-L N148 A28 N148 A28 Hydrogen Bonds Hydrogen Bonds 0.92 View
A-L A-L K147 H30 K147 H30 Hydrogen Bonds Hydrogen Bonds 0.87 View
A-L A-L F140 I93 F140 I93 Hydrophobic Hydrophobic 0.66 View
A-L A-L L249 I93 L249 I93 Hydrophobic Hydrophobic 1.0 View
A-L A-L K147 Y31 K147 Y31 Hydrophobic Hydrophobic 1.12 View
A-L A-L R158 I93 R158 I93 Hydrophobic Hydrophobic 0.74 View
A-L A-L S155 S92 S155 S92 Hydrogen Bonds Hydrogen Bonds 0.63 View
A-L A-L P251 W97 P251 W97 Hydrophobic Hydrophobic 1.11 View
A-L A-L Y144 K29 Y144 K29 Hydrophobic Hydrophobic 0.6 View
A-L A-L Y144 K29 Y144 K29 Hydrophobic Hydrophobic 0.66 View
A-L A-L F140 I93 F140 I93 Hydrophobic Hydrophobic 0.66 View
A-L A-L K147 D50 K147 D50 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.64 View
A-L A-L N148 A28 N148 A28 Hydrogen Bonds Hydrogen Bonds 0.84 View
A-L A-L R158 I93 R158 I93 Hydrophobic Hydrophobic 0.69 View
A-L A-L H146 A28 H146 A28 Hydrogen Bonds Hydrogen Bonds 0.7 View
A-L A-L K147 K29 K147 K29 Hydrogen Bonds Hydrogen Bonds 0.63 View
A-L A-L H146 A28 H146 A28 Hydrogen Bonds Hydrogen Bonds 0.54 View
A-L A-L K147 Y31 K147 Y31 Hydrophobic Hydrophobic 0.6 View
A-L A-L K147 Y31 K147 Y31 Hydrophobic Hydrophobic 1.79 View
A-L A-L L249 I93 L249 I93 Hydrophobic Hydrophobic 0.95 View
A-L A-L Y144 H30 Y144 H30 Aromatic Stacking Aromatic Stacking 0.7 View
A-L A-L K147 L27 K147 L27 Hydrogen Bonds Hydrogen Bonds 0.89 View
A-L A-L K147 D50 K147 D50 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.76 View
A-L A-L Y144 K29 Y144 K29 Hydrophobic Hydrophobic 0.71 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7LY0 | 7LY0_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7LY0 A-L R246 H30 Repulsive, Hydrogen Bonds 3.71 View
7LY0 A-L R246 H30 Repulsive 4.18 View
7LY0 A-L R246 H30 Repulsive 3.41 View
7LY0 A-L R246 H30 Repulsive 4.28 View
7LY0 A-L R246 H30 Repulsive, Hydrogen Bonds 3.21 View
7LY0 A-L R246 H30 Repulsive 4.68 View
7LY0 A-L R246 H30 Repulsive 4.01 View
7LY0 A-L R246 H30 Repulsive 4.54 View
7LY0 A-L R246 A90 Hydrogen Bonds 3.56 View
7LY0 A-L R246 D91 Hydrogen Bonds 3.27 View
7LY0 A-L R246 D91 Attractive 5.99 View
7LY0 A-L R246 D91 Hydrogen Bonds 2.79 View
7LY0 A-L R246 D91 Attractive 5.55 View
7LY0 A-L R246 S92 Hydrogen Bonds 3.84 View
7LY0_africa_mut A-L H146 K29 Hydrogen Bonds 3.87 View
7LY0_africa_mut A-L K147 A28 Hydrogen Bonds 3.82 View
7LY0_africa_mut A-L K147 Y31 Hydrophobic 4.04 View
7LY0_africa_mut A-L R158 D91 Attractive 5.80 View
7LY0_africa_mut A-L R158 I93 Hydrophobic 4.46 View
7LY0_africa_mut A-L I246 I93 Hydrophobic 4.00 View
7LY0_africa_mut A-L L249 I93 Hydrophobic 4.18 View
7LY0_africa_mut A-L L249 I93 Hydrophobic 3.13 View
7LY0_africa_mut A-L L249 I93 Hydrophobic 2.95 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph