VTR

10 main matches found (25 matches in total )

Execution time: 29.0 seconds

Match RMSD = 1.06

VTR = 0.1

Average AVD = 0.97 Å

Parameters

Chains(7LXZ.pdb ): B versus G

Chains(7LXZ_africa_mut.pdb ) B versus G

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7LXZ 4557 22 0 10 0 0 1 33
B7LXZ_africa_mut 4548 24 1 14 0 0 0 39

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
B-G B-G Y144 W105 Y144 W105 Hydrogen Bonds Hydrogen Bonds 0.73 View
B-G B-G G252 A102 G252 A102 Hydrogen Bonds Hydrogen Bonds 0.79 View
B-G B-G T250 W105 T250 W105 Hydrogen Bonds Hydrogen Bonds 1.02 View
B-G B-G P251 D31 P251 D31 Hydrophobic Hydrophobic 0.29 View
B-G B-G Y144 W105 Y144 W105 Hydrophobic Hydrophobic 0.86 View
B-G B-G Y144 W105 Y144 W105 Hydrophobic Hydrophobic 1.84 View
B-G B-G P251 A102 P251 A102 Hydrophobic Hydrophobic 0.9 View
B-G B-G G252 W105 G252 W105 Hydrogen Bonds Hydrogen Bonds 0.6 View
B-G B-G Y144 W105 Y144 W105 Aromatic Stacking 0.7 View
B-G B-G Y144 W105 Y144 W105 Hydrophobic Hydrophobic 0.83 View
B-G B-G Y144 W105 Y144 W105 Hydrophobic Hydrophobic 1.81 View
B-G B-G Y144 W105 Y144 W105 Hydrophobic Hydrophobic 1.15 View
B-G B-G D253 S54 D253 S54 Hydrogen Bonds Hydrogen Bonds 0.83 View
B-G B-G Y144 L106 Y144 L106 Hydrophobic Hydrophobic 0.98 View
B-G B-G G252 K104 G252 K104 Hydrogen Bonds Hydrogen Bonds 0.66 View
B-G B-G G252 D31 G252 D31 Hydrogen Bonds Hydrogen Bonds 0.97 View
B-G B-G Y144 W105 Y144 W105 Hydrophobic Hydrophobic 0.61 View
B-G B-G Y144 W105 Y144 W105 Hydrophobic Hydrophobic 1.2 View
B-G B-G D253 S53 D253 S53 Hydrogen Bonds Hydrogen Bonds 0.81 View
B-G B-G G257 W105 G257 W105 Hydrogen Bonds Hydrogen Bonds 1.15 View
B-G B-G D253 K104 D253 K104 Hydrophobic Hydrophobic 0.61 View
B-G B-G P251 Y103 P251 Y103 Hydrophobic Hydrophobic 1.1 View
B-G B-G R246 W105 I246 W105 Hydrophobic Hydrophobic 1.89 View
B-G B-G P251 D31 P251 D31 Hydrophobic Hydrophobic 0.47 View
B-G B-G Y144 W105 Y144 W105 Hydrophobic Hydrophobic 1.51 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7LXZ | 7LXZ_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7LXZ B-G Y144 L106 Hydrophobic 3.67 View
7LXZ B-G R246 W105 Hydrophobic 4.15 View
7LXZ B-G R246 W105 Hydrophobic 4.02 View
7LXZ B-G R246 W105 Hydrophobic 4.00 View
7LXZ B-G R246 W105 Hydrophobic 3.87 View
7LXZ B-G R246 W105 Hydrophobic 3.86 View
7LXZ B-G R246 W105 Hydrophobic 4.41 View
7LXZ B-G Y248 Y103 Hydrogen Bonds 2.71 View
7LXZ_africa_mut B-G Y248 Y103 Hydrophobic 4.37 View
7LXZ_africa_mut B-G Y248 Y103 Hydrophobic 4.01 View
7LXZ_africa_mut B-G Y248 Y103 Hydrophobic 4.23 View
7LXZ_africa_mut B-G Y248 W105 Hydrophobic 3.14 View
7LXZ_africa_mut B-G Y248 W105 Hydrophobic 3.52 View
7LXZ_africa_mut B-G P251 Y103 Hydrophobic 4.47 View
7LXZ_africa_mut B-G P251 Y103 Hydrophobic 4.21 View
7LXZ_africa_mut B-G G252 D31 Hydrogen Bonds 3.03 View
7LXZ_africa_mut B-G D253 S52 Hydrogen Bonds 2.96 View
7LXZ_africa_mut B-G D253 K104 Hydrophobic 4.19 View
7LXZ_africa_mut B-G D253 K104 Hydrophobic 3.82 View
7LXZ_africa_mut B-G D253 K104 Attractive 5.70 View
7LXZ_africa_mut B-G S255 S54 Hydrogen Bonds 3.69 View
7LXZ_africa_mut B-G S255 N56 Hydrogen Bonds 3.36 View
7LXZ_africa_mut B-G S256 S53 Hydrogen Bonds 3.56 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph