VTR

3 main matches found (6 matches in total )

Execution time: 24.0 seconds

Match RMSD = 0.6

VTR = 0.08

Average AVD = 0.59 Å

Parameters

Chains(7LXY.pdb ): B versus G

Chains(7LXY_africa_mut.pdb ) B versus G

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7LXY 4446 3 0 4 0 0 0 7
B7LXY_africa_mut 4437 17 0 10 0 0 0 27

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
B-G B-G Y144 W106 Y144 W106 Hydrophobic Hydrophobic 0.62 View
B-G B-G E156 W106 E156 W106 Hydrogen Bonds Hydrogen Bonds 0.45 View
B-G B-G E156 W106 E156 W106 Hydrophobic Hydrophobic 0.54 View
B-G B-G E156 W106 E156 W106 Hydrophobic Hydrophobic 0.54 View
B-G B-G Y144 S104 Y144 S104 Hydrogen Bonds Hydrogen Bonds 0.7 View
B-G B-G K147 S103 K147 S103 Hydrogen Bonds Hydrogen Bonds 0.7 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7LXY | 7LXY_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7LXY B-G N17 S56 Hydrogen Bonds 3.24 View
7LXY_africa_mut B-G Q14 N57 Hydrogen Bonds 2.69 View
7LXY_africa_mut B-G Q14 K58 Hydrogen Bonds 2.65 View
7LXY_africa_mut B-G Y144 W106 Hydrophobic 4.28 View
7LXY_africa_mut B-G Y144 W106 Hydrophobic 4.34 View
7LXY_africa_mut B-G Y144 W106 Hydrophobic 3.31 View
7LXY_africa_mut B-G Y144 W106 Hydrophobic 3.96 View
7LXY_africa_mut B-G Y144 W106 Hydrophobic 4.09 View
7LXY_africa_mut B-G Y144 W106 Hydrophobic 4.27 View
7LXY_africa_mut B-G Y144 W106 Hydrophobic 4.11 View
7LXY_africa_mut B-G K147 S103 Hydrogen Bonds 3.39 View
7LXY_africa_mut B-G K147 S103 Hydrogen Bonds 3.55 View
7LXY_africa_mut B-G N148 S103 Hydrogen Bonds 3.15 View
7LXY_africa_mut B-G E156 S105 Hydrogen Bonds 2.57 View
7LXY_africa_mut B-G E156 W106 Hydrogen Bonds 3.82 View
7LXY_africa_mut B-G I246 W106 Hydrophobic 3.93 View
7LXY_africa_mut B-G I246 W106 Hydrophobic 3.55 View
7LXY_africa_mut B-G I246 W106 Hydrophobic 3.91 View
7LXY_africa_mut B-G I246 W106 Hydrophobic 3.67 View
7LXY_africa_mut B-G I246 W106 Hydrophobic 3.34 View
7LXY_africa_mut B-G I246 W106 Hydrophobic 4.27 View
7LXY_africa_mut B-G I246 W106 Hydrophobic 4.00 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph