VTR

20 main matches found (39 matches in total )

Execution time: 5.0 seconds

Match RMSD = 0.72

VTR = 0.03

Average AVD = 0.65 Å

Parameters

Chains(7LXX.pdb ): A versus H

Chains(7LXX_africa_mut.pdb ) A versus H

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7LXX 352 23 0 20 0 0 1 44
B7LXX_africa_mut 349 24 0 20 0 0 1 45

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
H-A H-A K104 G252 K104 G252 Hydrogen Bonds Hydrogen Bonds 0.39 View
H-A H-A W105 Y144 W105 Y144 Hydrophobic Hydrophobic 0.44 View
H-A H-A D31 P251 D31 P251 Hydrophobic Hydrophobic 0.34 View
H-A H-A W105 G257 W105 G257 Hydrogen Bonds Hydrogen Bonds 0.95 View
H-A H-A D31 G252 D31 G252 Hydrogen Bonds Hydrogen Bonds 0.57 View
H-A H-A W105 T250 W105 T250 Hydrogen Bonds Hydrogen Bonds 0.51 View
H-A H-A A102 G252 A102 G252 Hydrogen Bonds Hydrogen Bonds 0.56 View
H-A H-A W105 Y144 W105 Y144 Hydrophobic Hydrophobic 0.63 View
H-A H-A S54 D253 S54 D253 Hydrogen Bonds Hydrogen Bonds 0.77 View
H-A H-A W105 Y144 W105 Y144 Hydrophobic Hydrophobic 0.93 View
H-A H-A A102 P251 A102 P251 Hydrophobic Hydrophobic 0.61 View
H-A H-A S53 D253 S53 D253 Hydrogen Bonds Hydrogen Bonds 0.41 View
H-A H-A Y103 P251 Y103 P251 Hydrophobic Hydrophobic 0.79 View
H-A H-A W105 Y144 W105 Y144 Hydrophobic Hydrophobic 0.94 View
H-A H-A L106 Y144 L106 Y144 Hydrophobic Hydrophobic 0.72 View
H-A H-A Y57 V16 Y57 V16 Hydrophobic Hydrophobic 0.61 View
H-A H-A W105 Y144 W105 Y144 Hydrophobic Hydrophobic 1.03 View
H-A H-A W105 R246 W105 I246 Hydrophobic Hydrophobic 1.94 View
H-A H-A W105 G252 W105 G252 Hydrogen Bonds Hydrogen Bonds 0.33 View
H-A H-A N56 S255 N56 S255 Hydrogen Bonds Hydrogen Bonds 0.39 View
H-A H-A N56 N17 N56 N17 Hydrogen Bonds Hydrogen Bonds 0.4 View
H-A H-A W105 R246 W105 I246 Hydrophobic Hydrophobic 0.9 View
H-A H-A S54 D253 S54 D253 Hydrogen Bonds Hydrogen Bonds 0.67 View
H-A H-A S54 D253 S54 D253 Hydrogen Bonds Hydrogen Bonds 0.4 View
H-A H-A W105 Y144 W105 Y144 Aromatic Stacking Aromatic Stacking 0.49 View
H-A H-A D31 P251 D31 P251 Hydrophobic Hydrophobic 0.46 View
H-A H-A W105 Y144 W105 Y144 Hydrophobic Hydrophobic 0.98 View
H-A H-A S53 D253 S53 D253 Hydrogen Bonds Hydrogen Bonds 0.79 View
H-A H-A W105 Y144 W105 Y144 Hydrophobic Hydrophobic 0.6 View
H-A H-A S53 S256 S53 S256 Hydrogen Bonds Hydrogen Bonds 0.34 View
H-A H-A K104 D253 K104 D253 Hydrophobic Hydrophobic 0.37 View
H-A H-A W105 R246 W105 I246 Hydrophobic Hydrophobic 1.21 View
H-A H-A S54 S255 S54 S255 Hydrogen Bonds Hydrogen Bonds 0.48 View
H-A H-A W105 Y144 W105 Y144 Hydrogen Bonds Hydrogen Bonds 0.56 View
H-A H-A L106 Y144 L106 Y144 Hydrophobic Hydrophobic 0.71 View
H-A H-A S53 D253 S53 D253 Hydrogen Bonds Hydrogen Bonds 0.66 View
H-A H-A W105 Y144 W105 Y144 Hydrophobic Hydrophobic 0.59 View
H-A H-A S52 D253 S52 D253 Hydrogen Bonds Hydrogen Bonds 0.67 View
H-A H-A S53 D253 S53 D253 Hydrogen Bonds Hydrogen Bonds 0.34 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7LXX | 7LXX_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7LXX H-A Y103 Y248 Hydrogen Bonds 2.96 View
7LXX H-A W105 R246 Hydrophobic 4.08 View
7LXX H-A W105 R246 Hydrophobic 3.98 View
7LXX H-A W105 R246 Hydrophobic 3.90 View
7LXX H-A W105 R246 Hydrophobic 3.85 View
7LXX_africa_mut H-A Y103 Y248 Hydrophobic 4.20 View
7LXX_africa_mut H-A Y103 Y248 Hydrogen Bonds 3.86 View
7LXX_africa_mut H-A K104 D253 Hydrophobic 4.42 View
7LXX_africa_mut H-A W105 Y144 Hydrophobic 4.10 View
7LXX_africa_mut H-A W105 Y248 Hydrophobic 3.40 View
7LXX_africa_mut H-A W105 Y248 Hydrophobic 3.51 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph