VTR

26 main matches found (26 matches in total )

Execution time: 3.0 seconds

Match RMSD = 0.35

VTR = 0.01

Average AVD = 0.34 Å

Parameters

Chains(7LXW.pdb ): A versus L

Chains(7LXW_africa_mut.pdb ) A versus L

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7LXW 317 0 18 12 0 5 0 35
B7LXW_africa_mut 314 0 18 13 0 6 0 37

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
L-A L-A R29 E154 R29 E154 Attractive Attractive 0.34 View
L-A L-A R29 H146 R29 H146 Repulsive Repulsive 0.41 View
L-A L-A R29 H146 R29 H146 Repulsive Repulsive 0.25 View
L-A L-A D50 K147 D50 K147 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.29 View
L-A L-A R29 H146 R29 H146 Hydrogen Bonds Hydrogen Bonds 0.69 View
L-A L-A R29 H146 R29 H146 Repulsive Repulsive 0.29 View
L-A L-A D95 R158 D95 R158 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.33 View
L-A L-A R29 E154 R29 E154 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.26 View
L-A L-A R29 E154 R29 E154 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.38 View
L-A L-A R29 H146 R29 H146 Repulsive Repulsive 0.34 View
L-A L-A R29 E154 R29 E154 Attractive Attractive 0.41 View
L-A L-A R29 E154 R29 E154 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.28 View
L-A L-A D50 K147 D50 K147 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.32 View
L-A L-A E28 K147 E28 K147 Hydrogen Bonds Hydrogen Bonds 0.41 View
L-A L-A K30 K147 K30 K147 Hydrogen Bonds Hydrogen Bonds 0.26 View
L-A L-A R29 E154 R29 E154 Attractive Attractive 0.25 View
L-A L-A D95 R158 D95 R158 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.31 View
L-A L-A D95 E156 D95 E156 Repulsive Repulsive 0.3 View
L-A L-A D95 R158 D95 R158 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.4 View
L-A L-A D95 R158 D95 R158 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.39 View
L-A L-A R29 E154 R29 E154 Attractive Attractive 0.31 View
L-A L-A D95 R158 D95 R158 Attractive Attractive 0.3 View
L-A L-A D95 R158 D95 R158 Attractive Attractive 0.29 View
L-A L-A D95 R158 D95 R158 Attractive Attractive 0.36 View
L-A L-A D95 R158 D95 R158 Attractive Attractive 0.38 View
L-A L-A R29 E154 R29 E154 Attractive Attractive 0.22 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7LXW | 7LXW_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7LXW_africa_mut L-A S92 R158 Hydrogen Bonds 3.89 View
7LXW_africa_mut L-A D95 E156 Repulsive 5.96 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph