VTR

6 main matches found (7 matches in total )

Execution time: 29.0 seconds

Match RMSD = 1.5

VTR = 0.31

Average AVD = 1.48 Å

Parameters

Chains(7LQV.pdb ): C versus Y

Chains(7LQV_africa_mut.pdb ) C versus Y

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7LQV 3941 1 0 9 0 6 0 16
B7LQV_africa_mut 3932 3 0 9 0 7 0 19

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
C-Y C-Y D253 D101 G252 D101 Repulsive Hydrogen Bonds 1.99 View
C-Y C-Y Q14 S31 Q14 S31 Hydrogen Bonds Hydrogen Bonds 1.33 View
C-Y C-Y Q14 V98 Q14 V98 Hydrophobic Hydrophobic 1.34 View
C-Y C-Y Q14 S31 Q14 S31 Hydrogen Bonds Hydrogen Bonds 1.26 View
C-Y C-Y E156 T97 E156 D99 Hydrogen Bonds Repulsive 1.62 View
C-Y C-Y E156 T97 E156 D99 Hydrogen Bonds Repulsive 1.63 View
C-Y C-Y Q14 S31 Q14 S31 Hydrogen Bonds Hydrogen Bonds 1.18 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7LQV | 7LQV_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7LQV C-Y E156 D99 Repulsive 5.20 View
7LQV C-Y E156 D99 Repulsive 5.14 View
7LQV C-Y G252 D101 Hydrogen Bonds 3.29 View
7LQV C-Y G252 D101 Hydrogen Bonds 2.67 View
7LQV C-Y D253 D101 Hydrogen Bonds 3.60 View
7LQV C-Y D253 D101 Hydrogen Bonds 3.70 View
7LQV C-Y D253 D101 Repulsive 5.40 View
7LQV C-Y D253 D101 Repulsive 4.50 View
7LQV C-Y D253 D101 Repulsive 4.24 View
7LQV_africa_mut C-Y C15 Q96 Hydrogen Bonds 3.63 View
7LQV_africa_mut C-Y E156 T97 Hydrogen Bonds 3.15 View
7LQV_africa_mut C-Y E156 T97 Hydrogen Bonds 2.56 View
7LQV_africa_mut C-Y E156 V98 Hydrophobic 3.84 View
7LQV_africa_mut C-Y E156 D99 Repulsive 5.18 View
7LQV_africa_mut C-Y R158 Q96 Hydrogen Bonds 3.73 View
7LQV_africa_mut C-Y S161 S31 Hydrogen Bonds 2.63 View
7LQV_africa_mut C-Y D253 Q96 Hydrophobic 3.98 View
7LQV_africa_mut C-Y D253 D101 Repulsive 4.90 View
7LQV_africa_mut C-Y D253 D101 Repulsive 4.24 View
7LQV_africa_mut C-Y D253 D101 Repulsive 5.28 View
7LQV_africa_mut C-Y D253 D101 Repulsive 4.22 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph