VTR

6 main matches found (17 matches in total )

Execution time: 28.0 seconds

Match RMSD = 1.22

VTR = 0.07

Average AVD = 1.16 Å

Parameters

Chains(7LQV.pdb ): B versus X

Chains(7LQV_africa_mut.pdb ) B versus X

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7LQV 3941 11 2 7 0 0 0 20
B7LQV_africa_mut 3932 16 2 5 0 0 0 23

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
B-X B-X K147 Y32 K147 Y32 Hydrophobic Hydrophobic 0.58 View
B-X B-X K147 Y32 K147 Y32 Hydrophobic Hydrophobic 0.89 View
B-X B-X K147 Y32 K147 Y32 Hydrogen Bonds Hydrogen Bonds 1.21 View
B-X B-X K147 Y32 K147 Y32 Hydrophobic Hydrophobic 0.97 View
B-X B-X L249 Y49 L249 Y49 Hydrophobic Hydrophobic 1.62 View
B-X B-X L249 S56 L249 S56 Hydrogen Bonds Hydrogen Bonds 2.0 View
B-X B-X K147 Y32 K147 Y32 Hydrophobic Hydrophobic 1.03 View
B-X B-X L249 Y49 L249 Y49 Hydrogen Bonds Hydrogen Bonds 1.11 View
B-X B-X K147 Y32 K147 Y32 Hydrophobic Hydrophobic 0.81 View
B-X B-X K147 D30 K147 D30 Hydrophobic Hydrophobic 0.59 View
B-X B-X K147 D30 K147 D30 Attractive Attractive 0.99 View
B-X B-X K147 Y32 K147 Y32 Hydrophobic Hydrophobic 1.14 View
B-X B-X K147 Y32 K147 Y32 Hydrophobic Hydrophobic 0.91 View
B-X B-X T250 S56 T250 S56 Hydrogen Bonds Hydrogen Bonds 1.75 View
B-X B-X H146 D30 H146 D30 Attractive Attractive 1.0 View
B-X B-X L249 Y49 L249 Y49 Hydrophobic Hydrophobic 1.78 View
B-X B-X K147 Y32 K147 Y32 Hydrophobic Hydrophobic 1.28 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7LQV | 7LQV_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7LQV B-X R246 K53 Hydrogen Bonds 3.57 View
7LQV B-X S247 K53 Hydrogen Bonds 2.78 View
7LQV B-X L249 Y49 Hydrogen Bonds 3.27 View
7LQV_africa_mut B-X K147 Y32 Hydrophobic 3.86 View
7LQV_africa_mut B-X L249 P55 Hydrophobic 3.97 View
7LQV_africa_mut B-X T250 S56 Hydrogen Bonds 3.80 View
7LQV_africa_mut B-X P251 P55 Hydrophobic 4.22 View
7LQV_africa_mut B-X P251 P55 Hydrophobic 3.86 View
7LQV_africa_mut B-X P251 P55 Hydrophobic 4.39 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph