VTR

10 main matches found (25 matches in total )

Execution time: 9.0 seconds

Match RMSD = 0.8

VTR = 0.08

Average AVD = 0.76 Å

Parameters

Chains(7LOP.pdb ): Z versus Y

Chains(7LOP_africa_mut.pdb ) Z versus Y

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7LOP 2097 15 7 11 0 0 1 34
B7LOP_africa_mut 2097 26 0 12 0 4 2 44

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
Z-Y Z-Y Q493 S30 Q493 S30 Hydrogen Bonds Hydrogen Bonds 1.3 View
Z-Y Z-Y F486 W94 F486 W94 Hydrophobic Hydrophobic 0.51 View
Z-Y Z-Y Y489 N93 Y489 N93 Hydrophobic Hydrophobic 1.18 View
Z-Y Z-Y F456 V29 F456 V29 Hydrophobic Hydrophobic 0.39 View
Z-Y Z-Y Q493 Y32 Q493 Y32 Hydrogen Bonds Hydrogen Bonds 0.9 View
Z-Y Z-Y Y489 N93 Y489 N93 Hydrophobic Hydrophobic 0.96 View
Z-Y Z-Y Y449 N53 Y449 N53 Hydrogen Bonds Hydrogen Bonds 0.99 View
Z-Y Z-Y F486 W94 F486 W94 Hydrophobic Hydrophobic 0.61 View
Z-Y Z-Y Y449 Y49 Y449 Y49 Hydrophobic Hydrophobic 0.37 View
Z-Y Z-Y Y449 Y32 Y449 Y32 Hydrophobic Hydrophobic 0.74 View
Z-Y Z-Y Y489 V29 Y489 V29 Hydrophobic Hydrophobic 0.63 View
Z-Y Z-Y G485 N93 G485 N93 Hydrogen Bonds Hydrogen Bonds 0.72 View
Z-Y Z-Y F486 W94 F486 W94 Hydrophobic Hydrophobic 0.71 View
Z-Y Z-Y F486 W94 F486 W94 Aromatic Stacking Aromatic Stacking 0.92 View
Z-Y Z-Y F456 V29 F456 V29 Hydrophobic Hydrophobic 0.62 View
Z-Y Z-Y Y489 V29 Y489 V29 Hydrophobic Hydrophobic 0.55 View
Z-Y Z-Y E484 N93 K484 N93 Hydrophobic Hydrophobic 1.09 View
Z-Y Z-Y G485 N93 G485 N93 Hydrogen Bonds Hydrogen Bonds 0.78 View
Z-Y Z-Y Q493 S30 Q493 S30 Hydrogen Bonds Hydrogen Bonds 1.32 View
Z-Y Z-Y Y449 D50 Y449 D50 Hydrogen Bonds Hydrogen Bonds 0.81 View
Z-Y Z-Y Y489 V29 Y489 V29 Hydrophobic Hydrophobic 0.78 View
Z-Y Z-Y F486 W94 F486 W94 Hydrophobic Hydrophobic 0.32 View
Z-Y Z-Y G446 Y49 G446 Y49 Hydrogen Bonds Hydrogen Bonds 0.52 View
Z-Y Z-Y F486 W94 F486 W94 Hydrophobic Hydrophobic 0.62 View
Z-Y Z-Y Q498 N53 Q498 N53 Hydrogen Bonds Hydrogen Bonds 0.62 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7LOP | 7LOP_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7LOP Z-Y E484 R91 Attractive 5.60 View
7LOP Z-Y E484 R91 Attractive 5.12 View
7LOP Z-Y E484 R91 Attractive 5.02 View
7LOP Z-Y E484 R91 Attractive 4.80 View
7LOP Z-Y E484 R91 Attractive 3.49 View
7LOP Z-Y E484 R91 Attractive, Hydrogen Bonds 2.99 View
7LOP Z-Y E484 R91 Attractive, Hydrogen Bonds 3.14 View
7LOP_africa_mut Z-Y G446 N53 Hydrogen Bonds 3.23 View
7LOP_africa_mut Z-Y Y449 Y49 Aromatic Stacking 5.78 View
7LOP_africa_mut Z-Y Y449 Y49 Hydrophobic 4.24 View
7LOP_africa_mut Z-Y L455 V29 Hydrophobic 4.19 View
7LOP_africa_mut Z-Y F456 V29 Hydrophobic 3.98 View
7LOP_africa_mut Z-Y F456 V29 Hydrophobic 4.35 View
7LOP_africa_mut Z-Y K484 R91 Repulsive 5.62 View
7LOP_africa_mut Z-Y K484 R91 Repulsive 5.06 View
7LOP_africa_mut Z-Y K484 R91 Repulsive 4.04 View
7LOP_africa_mut Z-Y K484 R91 Repulsive 5.88 View
7LOP_africa_mut Z-Y K484 S92 Hydrogen Bonds 3.36 View
7LOP_africa_mut Z-Y K484 N93 Hydrophobic 3.97 View
7LOP_africa_mut Z-Y K484 N93 Hydrophobic 4.32 View
7LOP_africa_mut Z-Y F486 W94 Hydrophobic 4.49 View
7LOP_africa_mut Z-Y F486 W94 Hydrophobic 4.34 View
7LOP_africa_mut Z-Y Y489 N93 Hydrophobic 4.13 View
7LOP_africa_mut Z-Y Y489 N93 Hydrophobic 3.74 View
7LOP_africa_mut Z-Y Y489 N93 Hydrophobic 3.07 View
7LOP_africa_mut Z-Y S494 Y32 Hydrogen Bonds 3.35 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph