VTR

9 main matches found (24 matches in total )

Execution time: 10.0 seconds

Match RMSD = 0.86

VTR = 0.09

Average AVD = 0.83 Å

Parameters

Chains(7LOP.pdb ): A versus L

Chains(7LOP_africa_mut.pdb ) A versus L

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7LOP 2097 15 7 10 0 0 1 33
B7LOP_africa_mut 2097 26 0 12 0 3 2 43

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
L-A L-A N93 Y489 N93 Y489 Hydrophobic Hydrophobic 1.14 View
L-A L-A W94 F486 W94 F486 Hydrophobic Hydrophobic 0.62 View
L-A L-A V29 F456 V29 F456 Hydrophobic Hydrophobic 0.58 View
L-A L-A N93 G485 N93 G485 Hydrogen Bonds Hydrogen Bonds 0.87 View
L-A L-A N93 E484 N93 K484 Hydrophobic Hydrophobic 1.2 View
L-A L-A W94 F486 W94 F486 Hydrophobic Hydrophobic 0.72 View
L-A L-A V29 F456 V29 F456 Hydrophobic Hydrophobic 0.69 View
L-A L-A W94 F486 W94 F486 Aromatic Stacking Aromatic Stacking 0.97 View
L-A L-A V29 Y489 V29 Y489 Hydrophobic Hydrophobic 0.7 View
L-A L-A N53 Q498 N53 Q498 Hydrogen Bonds Hydrogen Bonds 0.6 View
L-A L-A D50 Y449 D50 Y449 Hydrogen Bonds Hydrogen Bonds 0.83 View
L-A L-A Y49 G446 Y49 G446 Hydrogen Bonds Hydrogen Bonds 0.64 View
L-A L-A S30 Q493 S30 Q493 Hydrogen Bonds Hydrogen Bonds 1.22 View
L-A L-A N93 G485 N93 G485 Hydrogen Bonds Hydrogen Bonds 0.92 View
L-A L-A W94 F486 W94 F486 Hydrophobic Hydrophobic 0.67 View
L-A L-A Y32 Y449 Y32 Y449 Hydrophobic Hydrophobic 0.78 View
L-A L-A V29 Y489 V29 Y489 Hydrophobic Hydrophobic 0.76 View
L-A L-A N53 Y449 N53 Y449 Hydrogen Bonds Hydrogen Bonds 0.96 View
L-A L-A W94 F486 W94 F486 Hydrophobic Hydrophobic 0.45 View
L-A L-A Y49 Y449 Y49 Y449 Hydrophobic Hydrophobic 0.54 View
L-A L-A N93 Y489 N93 Y489 Hydrophobic Hydrophobic 1.08 View
L-A L-A S30 Q493 S30 Q493 Hydrogen Bonds Hydrogen Bonds 1.36 View
L-A L-A W94 F486 W94 F486 Hydrophobic Hydrophobic 0.76 View
L-A L-A V29 Y489 V29 Y489 Hydrophobic Hydrophobic 0.76 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7LOP | 7LOP_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7LOP L-A R91 E484 Attractive 4.89 View
7LOP L-A R91 E484 Attractive 5.59 View
7LOP L-A R91 E484 Attractive 3.59 View
7LOP L-A R91 E484 Attractive 5.15 View
7LOP L-A R91 E484 Attractive, Hydrogen Bonds 3.13 View
7LOP L-A R91 E484 Attractive 4.96 View
7LOP L-A R91 E484 Attractive, Hydrogen Bonds 3.17 View
7LOP_africa_mut L-A V29 L455 Hydrophobic 4.10 View
7LOP_africa_mut L-A V29 F456 Hydrophobic 4.39 View
7LOP_africa_mut L-A V29 F456 Hydrophobic 4.06 View
7LOP_africa_mut L-A V29 F456 Hydrophobic 4.47 View
7LOP_africa_mut L-A Y32 Q493 Hydrogen Bonds 3.13 View
7LOP_africa_mut L-A Y32 S494 Hydrogen Bonds 3.51 View
7LOP_africa_mut L-A Y49 Y449 Aromatic Stacking 5.95 View
7LOP_africa_mut L-A Y49 Y449 Hydrophobic 4.26 View
7LOP_africa_mut L-A N53 G446 Hydrogen Bonds 3.52 View
7LOP_africa_mut L-A R91 K484 Repulsive 5.87 View
7LOP_africa_mut L-A R91 K484 Repulsive 5.33 View
7LOP_africa_mut L-A R91 K484 Repulsive 4.34 View
7LOP_africa_mut L-A S92 K484 Hydrogen Bonds 3.46 View
7LOP_africa_mut L-A N93 K484 Hydrophobic 4.04 View
7LOP_africa_mut L-A N93 K484 Hydrophobic 4.31 View
7LOP_africa_mut L-A N93 Y489 Hydrophobic 4.33 View
7LOP_africa_mut L-A N93 Y489 Hydrophobic 3.90 View
7LOP_africa_mut L-A N93 Y489 Hydrophobic 3.21 View
7LOP_africa_mut L-A W94 F486 Hydrophobic 4.20 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph