VTR

1 main matches found (4 matches in total )

Execution time: 9.0 seconds

Match RMSD = 0.89

VTR = 0.12

Average AVD = 0.89 Å

Parameters

Chains(7LOP.pdb ): A versus H

Chains(7LOP_africa_mut.pdb ) A versus H

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7LOP 2097 4 0 5 0 0 0 9
B7LOP_africa_mut 2097 7 0 3 0 0 0 10

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
H-A H-A N58 E484 N58 K484 Hydrogen Bonds Hydrogen Bonds 0.89 View
H-A H-A N58 V483 N58 V483 Hydrophobic Hydrophobic 0.9 View
H-A H-A W50 V483 W50 V483 Hydrophobic Hydrophobic 0.77 View
H-A H-A N58 V483 N58 V483 Hydrophobic Hydrophobic 1.01 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7LOP | 7LOP_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7LOP H-A W50 E484 Hydrogen Bonds 2.87 View
7LOP H-A N58 E484 Hydrogen Bonds 3.64 View
7LOP H-A N58 E484 Hydrogen Bonds 3.69 View
7LOP H-A R99 T470 Hydrophobic 4.38 View
7LOP H-A G100 L492 Hydrogen Bonds 2.74 View
7LOP_africa_mut H-A W50 F490 Hydrophobic 4.27 View
7LOP_africa_mut H-A R99 T470 Hydrophobic 4.47 View
7LOP_africa_mut H-A R99 T470 Hydrogen Bonds 2.69 View
7LOP_africa_mut H-A R99 T470 Hydrogen Bonds 2.71 View
7LOP_africa_mut H-A R99 F490 Hydrophobic 4.49 View
7LOP_africa_mut H-A R99 F490 Hydrophobic 4.49 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph