VTR

11 main matches found (11 matches in total )

Execution time: 9.0 seconds

Match RMSD = 0.79

VTR = 0.01

Average AVD = 0.77 Å

Parameters

Chains(7LM8.pdb ): A versus L

Chains(7LM8_africa_mut.pdb ) A versus L

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7LM8 1043 0 5 7 0 0 0 12
B7LM8_africa_mut 1043 0 6 7 0 0 0 13

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
A-L A-L T415 T56 T415 T56 Hydrogen Bonds Hydrogen Bonds 0.82 View
A-L A-L R408 E55 R408 E55 Attractive Attractive 1.16 View
A-L A-L R408 T56 R408 T56 Hydrogen Bonds Hydrogen Bonds 0.69 View
A-L A-L R408 E55 R408 E55 Attractive Attractive 0.77 View
A-L A-L R408 L54 R408 L54 Hydrogen Bonds Hydrogen Bonds 0.77 View
A-L A-L R408 Y49 R408 Y49 Hydrogen Bonds Hydrogen Bonds 0.44 View
A-L A-L R408 E55 R408 E55 Attractive Attractive 0.82 View
A-L A-L R408 T56 R408 T56 Hydrogen Bonds Hydrogen Bonds 0.72 View
A-L A-L T415 T56 T415 T56 Hydrogen Bonds Hydrogen Bonds 0.69 View
A-L A-L R408 E55 R408 E55 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.8 View
A-L A-L R408 E55 R408 E55 Attractive Attractive 0.79 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7LM8 | 7LM8_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7LM8_africa_mut A-L K378 D50 Attractive 5.64 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph