VTR

12 main matches found (20 matches in total )

Execution time: 45.0 seconds

Match RMSD = 0.7

VTR = 0.04

Average AVD = 0.69 Å

Parameters

Chains(7LD1.pdb ): C versus N

Chains(7LD1_africa_mut.pdb ) C versus N

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7LD1 4251 8 0 13 0 0 0 21
B7LD1_africa_mut 4248 13 0 15 0 0 0 28

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
C-N C-N Q414 Y50 Q414 Y50 Hydrogen Bonds Hydrogen Bonds 0.67 View
C-N C-N Y505 I21 Y505 I21 Hydrogen Bonds Hydrogen Bonds 1.05 View
C-N C-N Q409 Y50 Q409 Y50 Hydrophobic Hydrophobic 1.03 View
C-N C-N T415 S51 T415 S51 Hydrogen Bonds Hydrogen Bonds 0.71 View
C-N C-N R408 Y117 R408 Y117 Hydrogen Bonds Hydrogen Bonds 0.65 View
C-N C-N Q409 Y50 Q409 Y50 Hydrogen Bonds Hydrogen Bonds 0.69 View
C-N C-N G416 S51 G416 S51 Hydrogen Bonds Hydrogen Bonds 0.64 View
C-N C-N T415 S52 T415 S52 Hydrogen Bonds Hydrogen Bonds 0.57 View
C-N C-N V503 L119 V503 L119 Hydrophobic Hydrophobic 0.43 View
C-N C-N R408 Y50 R408 Y50 Hydrophobic Hydrophobic 0.55 View
C-N C-N R408 Y117 R408 Y117 Hydrogen Bonds Hydrogen Bonds 0.75 View
C-N C-N R408 Y50 R408 Y50 Hydrogen Bonds Hydrogen Bonds 0.75 View
C-N C-N Q414 Y50 Q414 Y50 Hydrogen Bonds Hydrogen Bonds 0.67 View
C-N C-N V503 L119 V503 L119 Hydrophobic Hydrophobic 0.57 View
C-N C-N Y505 D20 Y505 D20 Hydrogen Bonds Hydrogen Bonds 0.89 View
C-N C-N Y505 P120 Y505 P120 Hydrophobic Hydrophobic 0.7 View
C-N C-N R408 Y50 R408 Y50 Hydrophobic Hydrophobic 0.62 View
C-N C-N Y505 D20 Y505 D20 Hydrophobic Hydrophobic 0.62 View
C-N C-N R408 Y50 R408 Y50 Hydrophobic Hydrophobic 0.61 View
C-N C-N D405 S118 D405 S118 Hydrogen Bonds Hydrogen Bonds 0.61 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7LD1 | 7LD1_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7LD1 C-N D405 S118 Hydrogen Bonds 3.82 View
7LD1_africa_mut C-N R408 Y117 Hydrogen Bonds 3.44 View
7LD1_africa_mut C-N V503 L119 Hydrophobic 4.09 View
7LD1_africa_mut C-N V503 L119 Hydrophobic 4.45 View
7LD1_africa_mut C-N V503 L119 Hydrophobic 4.18 View
7LD1_africa_mut C-N V503 L119 Hydrophobic 4.48 View
7LD1_africa_mut C-N V503 P120 Hydrophobic 4.01 View
7LD1_africa_mut C-N Y505 D20 Hydrogen Bonds 3.46 View
7LD1_africa_mut C-N Y505 D20 Hydrogen Bonds 3.82 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph