VTR

10 main matches found (11 matches in total )

Execution time: 51.0 seconds

Match RMSD = 0.53

VTR = 0.07

Average AVD = 0.5 Å

Parameters

Chains(7LD1.pdb ): A versus P

Chains(7LD1_africa_mut.pdb ) A versus P

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7LD1 4251 1 0 11 0 0 0 12
B7LD1_africa_mut 4248 26 0 19 0 0 0 45

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
A-P A-P K378 L131 K378 L131 Hydrophobic Hydrophobic 0.68 View
A-P A-P F377 Y128 F377 Y128 Hydrogen Bonds Hydrogen Bonds 0.37 View
A-P A-P Y369 Y128 Y369 Y128 Hydrogen Bonds Hydrogen Bonds 0.52 View
A-P A-P A372 N76 A372 N76 Hydrogen Bonds Hydrogen Bonds 0.71 View
A-P A-P K378 S126 K378 S126 Hydrogen Bonds Hydrogen Bonds 0.53 View
A-P A-P C379 S126 C379 S126 Hydrogen Bonds Hydrogen Bonds 0.51 View
A-P A-P C379 S126 C379 S126 Hydrogen Bonds Hydrogen Bonds 0.31 View
A-P A-P F377 Y128 F377 Y128 Hydrogen Bonds Hydrogen Bonds 0.17 View
A-P A-P F374 N76 F374 N76 Hydrogen Bonds Hydrogen Bonds 0.51 View
A-P A-P S371 N76 S371 N76 Hydrogen Bonds Hydrogen Bonds 0.63 View
A-P A-P C379 S126 C379 S126 Hydrogen Bonds Hydrogen Bonds 0.62 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7LD1 | 7LD1_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7LD1 A-P C379 S126 Hydrogen Bonds 3.35 View
7LD1_africa_mut A-P N370 Y128 Hydrogen Bonds 3.39 View
7LD1_africa_mut A-P S371 Y128 Hydrogen Bonds 3.89 View
7LD1_africa_mut A-P F374 Y128 Hydrophobic 4.37 View
7LD1_africa_mut A-P F374 Y128 Hydrophobic 4.38 View
7LD1_africa_mut A-P F374 Y128 Hydrophobic 4.49 View
7LD1_africa_mut A-P F374 Y128 Hydrophobic 3.46 View
7LD1_africa_mut A-P F374 Y128 Hydrophobic 4.04 View
7LD1_africa_mut A-P F374 Y128 Hydrophobic 4.25 View
7LD1_africa_mut A-P T376 Y128 Hydrogen Bonds 2.57 View
7LD1_africa_mut A-P T376 L130 Hydrogen Bonds 3.43 View
7LD1_africa_mut A-P T376 L131 Hydrogen Bonds 2.81 View
7LD1_africa_mut A-P T376 L131 Hydrophobic 3.70 View
7LD1_africa_mut A-P T376 L131 Hydrophobic 4.20 View
7LD1_africa_mut A-P T376 L131 Hydrophobic 4.05 View
7LD1_africa_mut A-P K378 W125 Hydrophobic 4.21 View
7LD1_africa_mut A-P K378 S126 Hydrogen Bonds 3.68 View
7LD1_africa_mut A-P K378 L131 Hydrophobic 4.37 View
7LD1_africa_mut A-P R408 L131 Hydrophobic 4.47 View
7LD1_africa_mut A-P R408 L131 Hydrogen Bonds 3.50 View
7LD1_africa_mut A-P Y501 Y79 Hydrogen Bonds 2.56 View
7LD1_africa_mut A-P Y501 A80 Hydrogen Bonds 3.45 View
7LD1_africa_mut A-P Y501 Q81 Hydrophobic 4.09 View
7LD1_africa_mut A-P Y501 Q81 Hydrophobic 3.00 View
7LD1_africa_mut A-P Y501 Q81 Hydrophobic 3.82 View
7LD1_africa_mut A-P Y501 Q81 Hydrophobic 2.93 View
7LD1_africa_mut A-P Y501 Q81 Hydrophobic 3.93 View
7LD1_africa_mut A-P Y501 Q81 Hydrophobic 2.93 View
7LD1_africa_mut A-P Y501 Q81 Hydrophobic 4.23 View
7LD1_africa_mut A-P Y501 Q81 Hydrophobic 3.79 View
7LD1_africa_mut A-P Y501 Q81 Hydrophobic 4.43 View
7LD1_africa_mut A-P Y501 Q81 Hydrophobic 3.79 View
7LD1_africa_mut A-P Y501 Q81 Hydrophobic 4.49 View
7LD1_africa_mut A-P V503 I78 Hydrophobic 4.43 View
7LD1_africa_mut A-P V503 I78 Hydrophobic 3.63 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph