VTR

6 main matches found (39 matches in total )

Execution time: 54.0 seconds

Match RMSD = 0.78

VTR = 0.02

Average AVD = 0.68 Å

Parameters

Chains(7LCN.pdb ): C versus H

Chains(7LCN_africa_mut.pdb ) C versus H

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7LCN 4296 39 0 5 0 0 3 47
B7LCN_africa_mut 4287 35 0 3 0 0 3 41

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
C-H C-H Y145 E31 Y145 E31 Hydrophobic Hydrophobic 0.76 View
C-H C-H V143 V104 V143 V104 Hydrophobic Hydrophobic 0.63 View
C-H C-H Y145 F102 Y145 F102 Aromatic Stacking Aromatic Stacking 0.66 View
C-H C-H F157 F102 F157 F102 Hydrophobic Hydrophobic 0.56 View
C-H C-H F157 Y27 F157 Y27 Aromatic Stacking Aromatic Stacking 0.94 View
C-H C-H F140 V104 F140 V104 Hydrophobic Hydrophobic 0.38 View
C-H C-H N149 E31 N149 E31 Hydrogen Bonds Hydrogen Bonds 0.36 View
C-H C-H N148 F51 N148 F51 Hydrophobic Hydrophobic 0.32 View
C-H C-H F157 Y27 F157 Y27 Hydrophobic Hydrophobic 0.7 View
C-H C-H F157 F102 F157 F102 Hydrophobic Hydrophobic 1.49 View
C-H C-H Y145 E31 Y145 E31 Hydrophobic Hydrophobic 0.5 View
C-H C-H Y145 F102 Y145 F102 Hydrophobic Hydrophobic 0.75 View
C-H C-H Y145 E31 Y145 E31 Hydrophobic Hydrophobic 0.56 View
C-H C-H H146 W108 H146 W108 Aromatic Stacking Aromatic Stacking 0.6 View
C-H C-H N149 P30 N149 P30 Hydrogen Bonds Hydrogen Bonds 0.25 View
C-H C-H Y145 E31 Y145 E31 Hydrophobic Hydrophobic 0.39 View
C-H C-H F157 Y27 F157 Y27 Hydrophobic Hydrophobic 0.62 View
C-H C-H F157 T28 F157 T28 Hydrophobic Hydrophobic 0.58 View
C-H C-H Y145 F102 Y145 F102 Hydrophobic Hydrophobic 0.62 View
C-H C-H F140 V104 F140 V104 Hydrophobic Hydrophobic 0.88 View
C-H C-H Y145 F102 Y145 F102 Hydrophobic Hydrophobic 0.46 View
C-H C-H N148 P53 N148 P53 Hydrogen Bonds Hydrogen Bonds 0.47 View
C-H C-H F140 V104 F140 V104 Hydrophobic Hydrophobic 0.38 View
C-H C-H Y145 F102 Y145 F102 Hydrophobic Hydrophobic 0.82 View
C-H C-H Y145 E31 Y145 E31 Hydrophobic Hydrophobic 0.86 View
C-H C-H F157 V104 F157 V104 Hydrophobic Hydrophobic 0.54 View
C-H C-H F157 F102 F157 F102 Hydrophobic Hydrophobic 0.92 View
C-H C-H Y145 E31 Y145 E31 Hydrophobic Hydrophobic 0.4 View
C-H C-H Y145 F102 Y145 F102 Hydrophobic Hydrophobic 0.66 View
C-H C-H F157 Y27 F157 Y27 Hydrophobic Hydrophobic 0.79 View
C-H C-H L244 V104 F140 V104 Hydrophobic Hydrophobic 1.97 View
C-H C-H Y145 F102 Y145 F102 Hydrophobic Hydrophobic 0.56 View
C-H C-H L244 V104 F140 V104 Hydrophobic Hydrophobic 1.97 View
C-H C-H V143 V104 V143 V104 Hydrophobic Hydrophobic 0.82 View
C-H C-H N148 F51 N148 F51 Hydrophobic Hydrophobic 0.41 View
C-H C-H F157 T28 F157 T28 Hydrophobic Hydrophobic 0.51 View
C-H C-H Y145 E31 Y145 E31 Hydrophobic Hydrophobic 0.7 View
C-H C-H N149 P30 N149 P30 Hydrophobic Hydrophobic 0.32 View
C-H C-H N149 F51 N149 F51 Hydrophobic Hydrophobic 0.49 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7LCN | 7LCN_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7LCN C-H L244 V104 Hydrophobic 4.15 View
7LCN C-H L244 V104 Hydrophobic 3.72 View
7LCN C-H L244 V104 Hydrophobic 4.37 View
7LCN C-H L244 V105 Hydrogen Bonds 3.71 View
7LCN C-H L244 V105 Hydrophobic 4.43 View
7LCN C-H L244 V105 Hydrophobic 3.69 View
7LCN C-H H245 V105 Hydrophobic 4.42 View
7LCN C-H H245 T106 Hydrogen Bonds 3.76 View
7LCN_africa_mut C-H Y145 F102 Hydrophobic 4.37 View
7LCN_africa_mut C-H Y145 F102 Hydrophobic 4.28 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph