VTR

13 main matches found (35 matches in total )

Execution time: 113.0 seconds

Match RMSD = 0.83

VTR = 0.05

Average AVD = 0.77 Å

Parameters

Chains(7LCN.pdb ): A versus B

Chains(7LCN_africa_mut.pdb ) A versus B

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7LCN 4296 32 2 7 0 0 3 44
B7LCN_africa_mut 4287 32 2 8 0 0 3 45

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
A-B A-B V143 V104 V143 V104 Hydrophobic Hydrophobic 0.69 View
A-B A-B V143 V105 V143 V105 Hydrophobic Hydrophobic 1.43 View
A-B A-B Y145 F102 Y145 F102 Hydrophobic Hydrophobic 0.59 View
A-B A-B Y145 F102 Y145 F102 Hydrophobic Hydrophobic 0.62 View
A-B A-B F157 Y27 F157 Y27 Hydrophobic Hydrophobic 0.9 View
A-B A-B H146 T106 H146 T106 Hydrogen Bonds Hydrogen Bonds 0.97 View
A-B A-B Y145 F102 Y145 F102 Hydrophobic Hydrophobic 0.62 View
A-B A-B W152 P30 W152 P30 Hydrophobic Hydrophobic 0.27 View
A-B A-B H146 E31 H146 E31 Attractive Attractive 0.6 View
A-B A-B F157 Y27 F157 Y27 Hydrophobic Hydrophobic 1.08 View
A-B A-B H146 E31 H146 E31 Attractive Attractive 0.6 View
A-B A-B Y145 Y27 Y145 Y27 Hydrophobic Hydrophobic 0.52 View
A-B A-B V143 V105 V143 V105 Hydrophobic Hydrophobic 1.56 View
A-B A-B Y145 F102 Y145 F102 Hydrophobic Aromatic Stacking 0.76 View
A-B A-B H146 E31 H146 E31 Hydrogen Bonds Hydrogen Bonds 0.47 View
A-B A-B F157 Y27 F157 Y27 Hydrophobic Hydrophobic 0.94 View
A-B A-B Y145 Y27 Y145 Y27 Aromatic Stacking Aromatic Stacking 0.55 View
A-B A-B W152 T28 W152 T28 Hydrophobic Hydrophobic 0.49 View
A-B A-B H146 T106 H146 T106 Hydrogen Bonds Hydrogen Bonds 0.93 View
A-B A-B F157 Y27 F157 Y27 Aromatic Stacking Aromatic Stacking 0.29 View
A-B A-B N149 P30 N149 P30 Hydrogen Bonds Hydrogen Bonds 0.74 View
A-B A-B F157 Y27 F157 Y27 Hydrophobic Hydrophobic 0.85 View
A-B A-B F157 Y27 F157 Y27 Hydrophobic Hydrophobic 0.99 View
A-B A-B F157 Y27 F157 Y27 Hydrophobic Hydrophobic 1.09 View
A-B A-B F157 Y27 F157 Y27 Hydrophobic Hydrophobic 1.01 View
A-B A-B Y145 E31 Y145 E31 Hydrophobic Hydrophobic 0.54 View
A-B A-B N148 E54 N148 E54 Hydrogen Bonds Hydrogen Bonds 1.21 View
A-B A-B F157 Y27 F157 Y27 Hydrophobic Hydrophobic 1.05 View
A-B A-B F157 Y27 F157 Y27 Hydrophobic Hydrophobic 1.0 View
A-B A-B N149 P53 N149 P53 Hydrogen Bonds Hydrogen Bonds 0.71 View
A-B A-B H146 E31 H146 E31 Hydrogen Bonds Hydrogen Bonds 0.52 View
A-B A-B Y145 Y27 Y145 Y27 Hydrophobic Hydrophobic 0.56 View
A-B A-B H146 P53 H146 P53 Hydrophobic Hydrophobic 0.36 View
A-B A-B Y145 F102 Y145 F102 Aromatic Stacking 0.98 View
A-B A-B Y145 E31 Y145 E31 Hydrophobic Hydrophobic 0.6 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7LCN | 7LCN_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7LCN A-B V143 V105 Hydrophobic 3.83 View
7LCN A-B L244 V104 Hydrophobic 4.04 View
7LCN A-B L244 V104 Hydrophobic 4.46 View
7LCN A-B L244 V104 Hydrophobic 4.49 View
7LCN A-B L244 V104 Hydrophobic 3.93 View
7LCN A-B L244 V104 Hydrophobic 4.12 View
7LCN A-B L244 V104 Hydrophobic 3.85 View
7LCN A-B L244 V104 Hydrophobic 4.28 View
7LCN A-B H245 V105 Hydrophobic 4.18 View
7LCN_africa_mut A-B Y145 F102 Hydrophobic 4.31 View
7LCN_africa_mut A-B Y145 F102 Hydrophobic 3.86 View
7LCN_africa_mut A-B Y145 F102 Hydrophobic 3.63 View
7LCN_africa_mut A-B Y145 F102 Hydrophobic 4.26 View
7LCN_africa_mut A-B Y145 F102 Hydrophobic 3.83 View
7LCN_africa_mut A-B Y145 V104 Hydrophobic 4.14 View
7LCN_africa_mut A-B H146 E31 Hydrophobic 4.36 View
7LCN_africa_mut A-B N148 P53 Hydrogen Bonds 2.66 View
7LCN_africa_mut A-B N149 P30 Hydrophobic 4.43 View
7LCN_africa_mut A-B F157 Y27 Hydrophobic 4.21 View
7LCN_africa_mut A-B F157 Y27 Hydrophobic 3.65 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph