VTR

28 main matches found (53 matches in total )

Execution time: 49.0 seconds

Match RMSD = 1.03

VTR = 0.07

Average AVD = 0.95 Å

Parameters

Chains(7LAB.pdb ): A versus T

Chains(7LAB_africa_mut.pdb ) A versus T

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7LAB 4194 31 16 15 0 8 2 72
B7LAB_africa_mut 4185 35 14 20 0 8 1 78

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
T-A T-A D50 H66 D50 H66 Attractive Attractive 1.3 View
T-A T-A D71 V213 D71 V213 Hydrophobic Hydrophobic 1.65 View
T-A T-A P121 W64 P121 W64 Hydrophobic Hydrophobic 0.58 View
T-A T-A Y52 V213 Y52 V213 Hydrophobic Hydrophobic 1.69 View
T-A T-A H132 R214 H132 R214 Repulsive Repulsive 0.5 View
T-A T-A Y131 F32 Y131 F32 Hydrophobic Hydrophobic 0.66 View
T-A T-A P121 W64 P121 W64 Hydrophobic Hydrophobic 0.58 View
T-A T-A S129 N30 S129 N30 Hydrogen Bonds Hydrogen Bonds 0.62 View
T-A T-A Y52 V213 Y52 V213 Hydrophobic Hydrophobic 1.5 View
T-A T-A P121 W64 P121 W64 Hydrophobic Hydrophobic 0.6 View
T-A T-A C130 W64 C130 W64 Hydrophobic Hydrophobic 0.76 View
T-A T-A P121 A27 P121 A27 Hydrophobic Hydrophobic 0.82 View
T-A T-A Y131 F32 Y131 F32 Hydrophobic Hydrophobic 0.69 View
T-A T-A D50 H66 D50 H66 Attractive Attractive 0.86 View
T-A T-A Y131 N30 Y131 N30 Hydrogen Bonds Hydrogen Bonds 0.68 View
T-A T-A H132 R214 H132 R214 Repulsive Repulsive 0.68 View
T-A T-A Y52 F186 Y52 V213 Aromatic Stacking Hydrophobic 1.69 View
T-A T-A H132 R214 H132 R214 Repulsive Repulsive 0.47 View
T-A T-A P121 W64 P121 W64 Hydrophobic Hydrophobic 0.57 View
T-A T-A S122 A27 S122 A27 Hydrogen Bonds Hydrogen Bonds 0.91 View
T-A T-A H132 R214 H132 R214 Repulsive Repulsive 0.51 View
T-A T-A Y52 V213 Y52 V213 Hydrophobic Hydrophobic 1.98 View
T-A T-A D71 K97 D71 K97 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.94 View
T-A T-A P121 W64 P121 W64 Hydrophobic Hydrophobic 0.6 View
T-A T-A S129 Y28 S129 Y28 Hydrogen Bonds Hydrogen Bonds 0.67 View
T-A T-A D71 K97 D71 K97 Attractive Attractive 0.98 View
T-A T-A H132 R214 H132 R214 Repulsive Hydrogen Bonds Repulsive Hydrogen Bonds 0.65 View
T-A T-A C130 R214 C130 R214 Hydrogen Bonds Hydrogen Bonds 0.66 View
T-A T-A Y131 F32 Y131 F32 Hydrophobic Hydrophobic 0.99 View
T-A T-A H132 R214 H132 R214 Repulsive Repulsive 0.46 View
T-A T-A L69 V213 L69 V213 Hydrophobic Hydrophobic 1.41 View
T-A T-A D50 H66 D50 H66 Attractive Attractive 0.85 View
T-A T-A D50 H66 D50 H66 Attractive Attractive 1.3 View
T-A T-A Y52 V213 Y52 V213 Hydrophobic Hydrophobic 1.55 View
T-A T-A P121 W64 P121 W64 Hydrophobic Hydrophobic 0.55 View
T-A T-A P121 Y28 P121 Y28 Hydrogen Bonds Hydrogen Bonds 0.69 View
T-A T-A H132 R214 H132 R214 Repulsive Hydrogen Bonds Repulsive Hydrogen Bonds 0.63 View
T-A T-A C130 W64 C130 W64 Hydrophobic Hydrophobic 0.78 View
T-A T-A Y131 F32 Y131 F32 Hydrophobic Hydrophobic 1.02 View
T-A T-A Y131 N30 Y131 N30 Hydrophobic Hydrophobic 0.62 View
T-A T-A Y131 F32 Y131 F32 Aromatic Stacking Aromatic Stacking 0.76 View
T-A T-A P121 W64 P121 W64 Hydrophobic Hydrophobic 0.59 View
T-A T-A E73 K97 E73 K97 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.91 View
T-A T-A C130 D215 C130 T29 Hydrogen Bonds Hydrogen Bonds 1.67 View
T-A T-A S129 T29 S129 T29 Hydrogen Bonds Hydrogen Bonds 0.81 View
T-A T-A E73 I68 E73 I68 Hydrophobic Hydrophobic 1.13 View
T-A T-A Y52 V213 Y52 V213 Hydrophobic Hydrophobic 1.74 View
T-A T-A E73 K97 E73 K97 Attractive Attractive 1.08 View
T-A T-A T49 I68 T49 I68 Hydrophobic Hydrophobic 0.96 View
T-A T-A Y52 V213 Y52 V213 Hydrophobic Hydrophobic 1.67 View
T-A T-A D74 K97 D74 K97 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 1.46 View
T-A T-A H132 R214 H132 R214 Repulsive Repulsive 0.69 View
T-A T-A D74 K97 D74 K97 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 1.1 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7LAB | 7LAB_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7LAB T-A D50 H69 Attractive 5.96 View
7LAB T-A D50 H69 Attractive 4.35 View
7LAB T-A D50 H69 Attractive 5.64 View
7LAB T-A D50 H69 Attractive 4.67 View
7LAB T-A Y52 F186 Hydrophobic 4.24 View
7LAB T-A Y52 V213 Hydrophobic 4.28 View
7LAB T-A Y52 V213 Hydrophobic 3.83 View
7LAB T-A L69 V213 Hydrophobic 4.26 View
7LAB T-A L69 V213 Hydrophobic 3.79 View
7LAB T-A E76 K187 Attractive, Hydrogen Bonds 2.80 View
7LAB T-A E76 K187 Attractive 4.95 View
7LAB T-A I78 V213 Hydrophobic 3.85 View
7LAB_africa_mut T-A D50 H69 Attractive, Hydrogen Bonds 4.07 View
7LAB_africa_mut T-A D50 H69 Attractive 5.33 View
7LAB_africa_mut T-A D50 H69 Attractive, Hydrogen Bonds 3.31 View
7LAB_africa_mut T-A Y52 V213 Hydrophobic 4.31 View
7LAB_africa_mut T-A Y52 V213 Hydrophobic 2.94 View
7LAB_africa_mut T-A Y52 V213 Hydrophobic 3.81 View
7LAB_africa_mut T-A Y52 V213 Hydrophobic 3.85 View
7LAB_africa_mut T-A Y52 V213 Hydrogen Bonds 3.55 View
7LAB_africa_mut T-A Y52 R214 Hydrophobic 3.92 View
7LAB_africa_mut T-A Y52 R214 Hydrogen Bonds 3.74 View
7LAB_africa_mut T-A E73 I68 Hydrophobic 4.11 View
7LAB_africa_mut T-A D74 K97 Hydrophobic 4.01 View
7LAB_africa_mut T-A E76 K187 Attractive, Hydrogen Bonds 4.49 View
7LAB_africa_mut T-A Y131 N30 Hydrogen Bonds 3.61 View
7LAB_africa_mut T-A Y131 F32 Hydrophobic 3.74 View
7LAB_africa_mut T-A Y131 F32 Hydrophobic 3.34 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph