VTR

12 main matches found (18 matches in total )

Execution time: 49.0 seconds

Match RMSD = 0.9

VTR = 0.03

Average AVD = 0.82 Å

Parameters

Chains(7LAB.pdb ): A versus S

Chains(7LAB_africa_mut.pdb ) A versus S

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7LAB 4194 8 0 11 0 0 1 20
B7LAB_africa_mut 4185 6 0 12 0 0 1 19

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
S-A S-A Y52 F32 Y52 F32 Hydrophobic Hydrophobic 1.98 View
S-A S-A S50 Q218 S50 Q218 Hydrogen Bonds Hydrogen Bonds 0.66 View
S-A S-A S87 N606 S87 N606 Hydrogen Bonds Hydrogen Bonds 0.81 View
S-A S-A Y52 F32 Y52 F32 Hydrophobic Hydrophobic 1.59 View
S-A S-A S51 Q218 S51 Q218 Hydrogen Bonds Hydrogen Bonds 0.55 View
S-A S-A Y52 F32 Y52 F32 Hydrophobic Hydrophobic 0.85 View
S-A S-A S49 Q218 S49 Q218 Hydrogen Bonds Hydrogen Bonds 1.03 View
S-A S-A Y52 F32 Y52 F32 Aromatic Stacking 0.64 View
S-A S-A Y52 F32 Y52 F32 Hydrophobic Hydrophobic 0.73 View
S-A S-A S51 Q218 S51 Q218 Hydrogen Bonds Hydrogen Bonds 0.41 View
S-A S-A Y52 R214 Y52 R214 Hydrogen Bonds Hydrogen Bonds 0.84 View
S-A S-A S50 Q218 S50 Q218 Hydrogen Bonds Hydrogen Bonds 0.52 View
S-A S-A S50 Q218 S50 Q218 Hydrogen Bonds Hydrogen Bonds 0.51 View
S-A S-A Y52 R214 Y52 R214 Hydrogen Bonds Hydrogen Bonds 0.88 View
S-A S-A S51 Q218 S51 Q218 Hydrogen Bonds Hydrogen Bonds 0.56 View
S-A S-A Y52 F32 Y52 F32 Hydrophobic Hydrophobic 0.76 View
S-A S-A Y52 Q218 Y52 Q218 Hydrophobic Hydrophobic 0.7 View
S-A S-A Y52 Q218 Y52 Q218 Hydrogen Bonds Hydrogen Bonds 0.65 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7LAB | 7LAB_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7LAB S-A Y111 L212 Hydrophobic 4.45 View
7LAB S-A Y111 L212 Hydrophobic 4.46 View
7LAB_africa_mut S-A S49 Q218 Hydrogen Bonds 3.73 View
7LAB_africa_mut S-A Y52 F32 Aromatic Stacking 5.30 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph