VTR

4 main matches found (18 matches in total )

Execution time: 8.0 seconds

Match RMSD = 0.52

VTR = 0.0

Average AVD = 0.51 Å

Parameters

Chains(7L5B.pdb ): A versus L

Chains(7L5B_africa_mut.pdb ) A versus L

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7L5B 599 14 0 2 0 0 2 18
B7L5B_africa_mut 599 14 0 3 0 0 2 19

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
A-L A-L F486 Y93 F486 Y93 Hydrophobic Hydrophobic 0.42 View
A-L A-L F486 Y93 F486 Y93 Hydrophobic Hydrophobic 0.5 View
A-L A-L F486 Y32 F486 Y32 Aromatic Stacking Aromatic Stacking 0.31 View
A-L A-L F486 Y32 F486 Y32 Hydrophobic Hydrophobic 0.56 View
A-L A-L F486 Y32 F486 Y32 Hydrophobic Hydrophobic 0.44 View
A-L A-L F486 Y93 F486 Y93 Aromatic Stacking Aromatic Stacking 0.44 View
A-L A-L F486 Y93 F486 Y93 Hydrophobic Hydrophobic 0.77 View
A-L A-L F486 Y32 F486 Y32 Hydrophobic Hydrophobic 0.46 View
A-L A-L F486 Y93 F486 Y93 Hydrophobic Hydrophobic 0.57 View
A-L A-L F486 Y93 F486 Y93 Hydrophobic Hydrophobic 0.46 View
A-L A-L E484 S97 K484 S97 Hydrogen Bonds Hydrogen Bonds 0.36 View
A-L A-L F486 Y93 F486 Y93 Hydrophobic Hydrophobic 0.35 View
A-L A-L F486 Y93 F486 Y93 Hydrophobic Hydrophobic 0.65 View
A-L A-L F486 Y93 F486 Y93 Hydrophobic Hydrophobic 0.7 View
A-L A-L F486 Y93 F486 Y93 Hydrophobic Hydrophobic 0.5 View
A-L A-L F486 S97 F486 S97 Hydrogen Bonds Hydrogen Bonds 0.56 View
A-L A-L F486 Y93 F486 Y93 Hydrophobic Hydrophobic 0.44 View
A-L A-L F486 Y93 F486 Y93 Hydrophobic Hydrophobic 0.63 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7L5B | 7L5B_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7L5B_africa_mut A-L N487 S95 Hydrogen Bonds 3.75 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph