VTR

5 main matches found (20 matches in total )

Execution time: 10.0 seconds

Match RMSD = 0.53

VTR = 0.01

Average AVD = 0.45 Å

Parameters

Chains(7L5B.pdb ): A versus H

Chains(7L5B_africa_mut.pdb ) A versus H

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7L5B 599 15 0 6 0 1 0 22
B7L5B_africa_mut 599 18 0 6 0 0 0 24

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
A-H A-H Y449 F29 Y449 F29 Hydrophobic Hydrophobic 0.27 View
A-H A-H F490 I54 F490 I54 Hydrophobic Hydrophobic 0.49 View
A-H A-H V483 N59 V483 N59 Hydrophobic Hydrophobic 0.19 View
A-H A-H E484 W50 K484 W50 Hydrophobic Hydrophobic 1.45 View
A-H A-H Y449 S77 Y449 S77 Hydrogen Bonds Hydrogen Bonds 0.49 View
A-H A-H Y449 T30 Y449 T30 Hydrophobic Hydrophobic 0.26 View
A-H A-H F490 I54 F490 I54 Hydrophobic Hydrophobic 0.61 View
A-H A-H E484 W50 K484 W50 Hydrophobic Hydrophobic 0.91 View
A-H A-H Y449 T30 Y449 T30 Hydrophobic Hydrophobic 0.3 View
A-H A-H E484 W50 K484 W50 Hydrophobic Hydrophobic 0.33 View
A-H A-H L452 I54 L452 I54 Hydrophobic Hydrophobic 0.66 View
A-H A-H E484 W50 K484 W50 Hydrophobic Hydrophobic 0.34 View
A-H A-H Y449 T30 Y449 T30 Hydrophobic Hydrophobic 0.39 View
A-H A-H F490 N52 F490 N52 Hydrophobic Hydrophobic 0.25 View
A-H A-H S494 T30 S494 T30 Hydrogen Bonds Hydrogen Bonds 0.32 View
A-H A-H Y449 F29 Y449 F29 Hydrophobic Hydrophobic 0.48 View
A-H A-H Y449 F29 Y449 F29 Hydrogen Bonds Hydrogen Bonds 0.29 View
A-H A-H Y449 T30 Y449 T30 Hydrophobic Hydrophobic 0.4 View
A-H A-H E484 N59 K484 N59 Hydrogen Bonds Hydrogen Bonds 0.36 View
A-H A-H Y449 Y27 Y449 Y27 Hydrogen Bonds Hydrogen Bonds 0.29 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7L5B | 7L5B_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7L5B A-H E484 Y33 Hydrogen Bonds 3.15 View
7L5B A-H E484 D56 Repulsive 4.87 View
7L5B_africa_mut A-H Y449 F29 Hydrophobic 4.35 View
7L5B_africa_mut A-H L452 I54 Hydrophobic 4.01 View
7L5B_africa_mut A-H K484 Y33 Hydrogen Bonds 2.74 View
7L5B_africa_mut A-H K484 W50 Hydrophobic 4.24 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph