VTR

15 main matches found (18 matches in total )

Execution time: 27.0 seconds

Match RMSD = 1.14

VTR = 0.23

Average AVD = 1.04 Å

Parameters

Chains(7L2F.pdb ): A versus H

Chains(7L2F_africa_mut.pdb ) A versus H

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7L2F 3916 24 19 10 0 0 1 54
B7L2F_africa_mut 3907 6 8 13 0 5 0 32

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
A-H A-H R158 D98 R158 Y100 Attractive Hydrogen Bonds 1.16 View
A-H A-H P251 P96 P251 P96 Hydrophobic Hydrophobic 1.35 View
A-H A-H D253 Y32 D253 Y32 Hydrogen Bonds Hydrogen Bonds 1.01 View
A-H A-H D253 R94 D253 R94 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 1.91 View
A-H A-H D253 R94 D253 R94 Attractive Attractive 0.49 View
A-H A-H D253 R94 D253 R94 Attractive Attractive Hydrogen Bonds 0.48 View
A-H A-H P251 P96 P251 P96 Hydrophobic Hydrophobic 1.91 View
A-H A-H Q14 T28 Q14 T28 Hydrophobic Hydrophobic 0.65 View
A-H A-H D253 R94 D253 R94 Attractive Attractive 0.5 View
A-H A-H Q14 S31 Q14 S31 Hydrogen Bonds Hydrogen Bonds 0.49 View
A-H A-H D253 R94 D253 R94 Attractive Attractive 0.83 View
A-H A-H R158 D98 R158 Y100 Attractive Hydrogen Bonds Hydrogen Bonds 1.41 View
A-H A-H D253 R94 D253 R94 Attractive Hydrogen Bonds Attractive 0.82 View
A-H A-H Q14 Y32 Q14 Y32 Hydrogen Bonds Hydrogen Bonds 1.23 View
A-H A-H Q14 S31 Q14 S31 Hydrogen Bonds Hydrogen Bonds 0.64 View
A-H A-H R158 D98 R158 Y100 Attractive Hydrogen Bonds 1.24 View
A-H A-H D253 R94 D253 R94 Attractive Attractive 1.64 View
A-H A-H D253 Y32 D253 Y32 Hydrogen Bonds Hydrogen Bonds 1.02 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7L2F | 7L2F_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7L2F A-H Y144 Y100 Hydrophobic 4.09 View
7L2F A-H Y144 Y100 Hydrophobic 4.15 View
7L2F A-H Y144 Y100 Hydrophobic 4.11 View
7L2F A-H Y144 Y100 Aromatic Stacking 4.18 View
7L2F A-H Y144 Y100 Hydrophobic 3.53 View
7L2F A-H Y144 Y100 Hydrophobic 4.25 View
7L2F A-H Y144 Y100 Hydrophobic 3.54 View
7L2F A-H Y144 Y100 Hydrophobic 3.92 View
7L2F A-H Y144 Y100 Hydrophobic 3.81 View
7L2F A-H Y144 Y100 Hydrophobic 4.19 View
7L2F A-H Y144 Y100 Hydrophobic 3.50 View
7L2F A-H Y144 Y100 Hydrophobic 3.79 View
7L2F A-H Y144 Y100 Hydrophobic 3.54 View
7L2F A-H Y144 Y100 Hydrophobic 3.84 View
7L2F A-H Y144 Y100 Hydrophobic 4.07 View
7L2F A-H Y144 Y100 Hydrophobic 4.12 View
7L2F A-H Y144 Y100 Hydrophobic 3.78 View
7L2F A-H Y144 Y100 Hydrophobic 3.99 View
7L2F A-H E154 Y100 Hydrophobic 4.28 View
7L2F A-H E156 Y100 Hydrophobic 4.24 View
7L2F A-H E156 Y100 Hydrophobic 4.06 View
7L2F A-H E156 Y100 Hydrophobic 4.25 View
7L2F A-H E156 Y100 Hydrogen Bonds 2.80 View
7L2F A-H R158 D98 Attractive 4.74 View
7L2F A-H R158 D98 Attractive 5.77 View
7L2F A-H R246 D98 Attractive 5.67 View
7L2F A-H R246 D98 Attractive 4.40 View
7L2F A-H R246 D98 Attractive 5.41 View
7L2F A-H R246 D98 Attractive 4.37 View
7L2F A-H R246 D98 Attractive 5.84 View
7L2F A-H R246 D98 Attractive, Hydrogen Bonds 3.49 View
7L2F A-H R246 D98 Attractive 4.18 View
7L2F_africa_mut A-H Y144 Y100 Hydrophobic 3.98 View
7L2F_africa_mut A-H Y144 Y100 Hydrogen Bonds 2.61 View
7L2F_africa_mut A-H D253 R94 Attractive 5.10 View
7L2F_africa_mut A-H D253 D98 Repulsive 5.71 View
7L2F_africa_mut A-H D253 D98 Repulsive 5.78 View
7L2F_africa_mut A-H D253 Y100 Hydrophobic 3.78 View
7L2F_africa_mut A-H D253 D101 Hydrophobic 3.95 View
7L2F_africa_mut A-H D253 D101 Repulsive 5.43 View
7L2F_africa_mut A-H D253 D101 Hydrogen Bonds 3.77 View
7L2F_africa_mut A-H D253 D101 Repulsive 5.84 View
7L2F_africa_mut A-H D253 D101 Repulsive 4.48 View
7L2F_africa_mut A-H S254 D101 Hydrogen Bonds 3.88 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph