VTR

12 main matches found (46 matches in total )

Execution time: 27.0 seconds

Match RMSD = 1.21

VTR = 0.14

Average AVD = 1.11 Å

Parameters

Chains(7L2D.pdb ): A versus H

Chains(7L2D_africa_mut.pdb ) A versus H

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7L2D 3473 42 12 18 0 0 1 73
B7L2D_africa_mut 3464 66 5 12 0 0 1 84

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
A-H A-H Y248 L32 Y248 L32 Hydrophobic Hydrophobic 0.88 View
A-H A-H Y144 E31 Y144 E31 Hydrophobic Hydrophobic 0.23 View
A-H A-H K147 E71 K147 E71 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.96 View
A-H A-H Y248 Y27 Y248 Y27 Hydrophobic Hydrophobic 0.93 View
A-H A-H Y248 L32 Y248 L32 Hydrophobic Hydrophobic 1.83 View
A-H A-H Y144 I30 Y144 I30 Hydrophobic Hydrophobic 0.55 View
A-H A-H K147 F51 K147 F51 Hydrophobic Hydrophobic 0.74 View
A-H A-H K147 F51 K147 F51 Hydrophobic Hydrophobic 0.41 View
A-H A-H K147 F51 K147 F51 Hydrophobic Hydrophobic 0.51 View
A-H A-H Y145 A97 Y145 A97 Hydrophobic Hydrophobic 0.91 View
A-H A-H Y145 V98 Y145 V98 Hydrophobic Hydrophobic 1.57 View
A-H A-H Y145 V98 Y145 V98 Hydrophobic Hydrophobic 1.61 View
A-H A-H Y248 Y27 Y248 Y27 Hydrophobic Hydrophobic 1.16 View
A-H A-H Y144 E31 Y144 E31 Hydrophobic Hydrophobic 0.23 View
A-H A-H Y145 V98 Y145 V98 Hydrophobic Hydrophobic 1.58 View
A-H A-H K147 I30 K147 I30 Hydrogen Bonds Hydrogen Bonds 0.49 View
A-H A-H Y248 Y27 Y248 Y27 Hydrophobic Hydrophobic 0.95 View
A-H A-H Y248 Y27 Y248 Y27 Hydrophobic Hydrophobic 1.1 View
A-H A-H R246 Y27 Y248 Y27 Hydrophobic Hydrophobic 1.84 View
A-H A-H K147 F51 K147 F51 Hydrophobic Hydrophobic 0.66 View
A-H A-H P251 I99 P251 I99 Hydrophobic Hydrophobic 1.31 View
A-H A-H Y248 Y27 Y248 Y27 Hydrophobic Hydrophobic 0.98 View
A-H A-H K147 E71 K147 E71 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 1.12 View
A-H A-H K147 F51 K147 F51 Hydrophobic Hydrophobic 0.84 View
A-H A-H Y145 V98 Y145 V98 Hydrophobic Hydrophobic 1.66 View
A-H A-H S254 Q1 S254 Q1 Hydrogen Bonds Hydrogen Bonds 1.43 View
A-H A-H Y248 Y27 Y248 Y27 Aromatic Stacking Aromatic Stacking 1.61 View
A-H A-H K147 F51 K147 F51 Hydrophobic Hydrophobic 0.45 View
A-H A-H Y145 V98 Y145 V98 Hydrophobic Hydrophobic 1.26 View
A-H A-H Y145 V98 Y145 V98 Hydrophobic Hydrophobic 1.55 View
A-H A-H Y248 I96 Y248 I96 Hydrophobic Hydrophobic 1.82 View
A-H A-H W152 V98 W152 V98 Hydrophobic Hydrophobic 1.37 View
A-H A-H L249 G100 L249 I99 Hydrogen Bonds Hydrophobic 1.99 View
A-H A-H K147 F51 K147 F51 Hydrophobic Hydrophobic 0.35 View
A-H A-H Y145 V98 Y145 V98 Hydrophobic Hydrophobic 1.2 View
A-H A-H Y144 E31 Y144 E31 Hydrophobic Hydrophobic 0.24 View
A-H A-H Y145 V98 Y145 V98 Hydrophobic Hydrophobic 1.62 View
A-H A-H K150 E53 K150 E53 Attractive Attractive 1.65 View
A-H A-H K150 E53 K150 E53 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 1.51 View
A-H A-H S255 Q1 S255 Q1 Hydrogen Bonds Hydrogen Bonds 1.26 View
A-H A-H S255 Q1 S255 Q1 Hydrogen Bonds Hydrogen Bonds 1.15 View
A-H A-H Y248 Y27 Y248 Y27 Hydrophobic Hydrophobic 1.0 View
A-H A-H P251 I99 P251 I99 Hydrophobic Hydrophobic 1.82 View
A-H A-H Y145 A97 Y145 A97 Hydrophobic Hydrophobic 0.94 View
A-H A-H K147 L29 K147 L29 Hydrogen Bonds Hydrogen Bonds 0.79 View
A-H A-H K147 L32 K147 L32 Hydrogen Bonds Hydrogen Bonds 1.06 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7L2D | 7L2D_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7L2D A-H K150 E53 Hydrogen Bonds 2.57 View
7L2D A-H R246 G26 Hydrogen Bonds 2.96 View
7L2D A-H R246 Y27 Hydrophobic 4.03 View
7L2D A-H R246 T28 Hydrogen Bonds 3.37 View
7L2D A-H R246 E31 Attractive, Hydrogen Bonds 3.10 View
7L2D A-H R246 E31 Attractive 4.00 View
7L2D A-H R246 E31 Attractive 3.67 View
7L2D A-H R246 E31 Attractive 4.30 View
7L2D A-H R246 E31 Attractive 4.90 View
7L2D A-H R246 E31 Attractive 5.61 View
7L2D A-H R246 E31 Attractive, Hydrogen Bonds 3.46 View
7L2D A-H R246 E31 Attractive, Hydrogen Bonds 3.64 View
7L2D A-H Y248 I96 Hydrophobic 4.40 View
7L2D A-H Y248 I96 Hydrophobic 4.36 View
7L2D A-H Y248 I96 Hydrophobic 3.58 View
7L2D A-H Y248 I96 Hydrophobic 4.46 View
7L2D A-H Y248 D101 Hydrogen Bonds 3.42 View
7L2D A-H P251 I96 Hydrophobic 4.12 View
7L2D A-H P251 I96 Hydrophobic 4.02 View
7L2D A-H P251 I99 Hydrophobic 4.29 View
7L2D A-H G252 D101 Hydrogen Bonds 2.55 View
7L2D_africa_mut A-H Y144 I30 Hydrophobic 4.35 View
7L2D_africa_mut A-H K147 F51 Hydrophobic 4.46 View
7L2D_africa_mut A-H K147 F51 Hydrophobic 4.42 View
7L2D_africa_mut A-H K147 A97 Hydrophobic 4.39 View
7L2D_africa_mut A-H R158 E31 Attractive 5.71 View
7L2D_africa_mut A-H Y248 V2 Hydrophobic 4.31 View
7L2D_africa_mut A-H Y248 Y27 Hydrophobic 4.22 View
7L2D_africa_mut A-H Y248 Y27 Hydrophobic 4.05 View
7L2D_africa_mut A-H Y248 Y27 Hydrophobic 3.41 View
7L2D_africa_mut A-H Y248 Y27 Hydrophobic 4.38 View
7L2D_africa_mut A-H Y248 Y27 Hydrophobic 3.68 View
7L2D_africa_mut A-H Y248 Y27 Hydrophobic 4.46 View
7L2D_africa_mut A-H Y248 Y27 Hydrophobic 2.98 View
7L2D_africa_mut A-H Y248 Y27 Hydrophobic 3.88 View
7L2D_africa_mut A-H Y248 Y27 Hydrophobic 4.17 View
7L2D_africa_mut A-H Y248 I96 Hydrophobic 4.28 View
7L2D_africa_mut A-H Y248 I96 Hydrophobic 4.40 View
7L2D_africa_mut A-H Y248 I96 Hydrophobic 4.47 View
7L2D_africa_mut A-H Y248 I96 Hydrophobic 3.22 View
7L2D_africa_mut A-H Y248 I96 Hydrophobic 3.74 View
7L2D_africa_mut A-H Y248 I96 Hydrophobic 4.19 View
7L2D_africa_mut A-H Y248 I96 Hydrophobic 3.72 View
7L2D_africa_mut A-H Y248 G100 Hydrogen Bonds 2.96 View
7L2D_africa_mut A-H L249 I96 Hydrophobic 4.47 View
7L2D_africa_mut A-H L249 I99 Hydrophobic 4.15 View
7L2D_africa_mut A-H L249 I99 Hydrophobic 3.86 View
7L2D_africa_mut A-H L249 I99 Hydrophobic 3.08 View
7L2D_africa_mut A-H L249 I99 Hydrophobic 4.18 View
7L2D_africa_mut A-H L249 I99 Hydrophobic 2.95 View
7L2D_africa_mut A-H P251 I99 Hydrophobic 3.88 View
7L2D_africa_mut A-H P251 I99 Hydrophobic 3.09 View
7L2D_africa_mut A-H P251 I99 Hydrophobic 3.87 View
7L2D_africa_mut A-H P251 I99 Hydrophobic 3.55 View
7L2D_africa_mut A-H D253 Q1 Hydrogen Bonds 3.87 View
7L2D_africa_mut A-H S254 Q1 Hydrogen Bonds 3.36 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph