VTR

19 main matches found (59 matches in total )

Execution time: 14.0 seconds

Match RMSD = 1.08

VTR = 0.06

Average AVD = 1.0 Å

Parameters

Chains(7L2C.pdb ): B versus C

Chains(7L2C_africa_mut.pdb ) B versus C

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7L2C 1404 45 12 14 0 0 4 75
B7L2C_africa_mut 1398 46 6 15 0 0 4 71

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
B-C B-C P251 Q1 P251 Q1 Hydrogen Bonds Hydrogen Bonds 1.4 View
B-C B-C K150 E53 K150 E53 Hydrogen Bonds Hydrogen Bonds 1.81 View
B-C B-C K147 L32 K147 L32 Hydrogen Bonds Hydrogen Bonds 1.2 View
B-C B-C K147 I30 K147 I30 Hydrogen Bonds Hydrogen Bonds 0.44 View
B-C B-C K147 F51 K147 F51 Hydrophobic Hydrophobic 0.63 View
B-C B-C Y248 E31 Y248 E31 Hydrogen Bonds Hydrogen Bonds 0.49 View
B-C B-C T250 Y102 T250 Y102 Hydrogen Bonds Hydrogen Bonds 1.28 View
B-C B-C W152 Y98 W152 Y98 Hydrophobic Hydrophobic 1.56 View
B-C B-C K147 E71 K147 E71 Attractive Attractive 1.04 View
B-C B-C Y248 E31 Y248 E31 Hydrophobic Hydrophobic 0.48 View
B-C B-C K150 V55 K150 V55 Hydrophobic Hydrophobic 0.28 View
B-C B-C L249 Y102 L249 Y102 Hydrogen Bonds Hydrogen Bonds 1.61 View
B-C B-C Y248 W96 Y248 W96 Hydrophobic Hydrophobic 1.84 View
B-C B-C W152 Y98 W152 Y98 Aromatic Stacking Aromatic Stacking 1.01 View
B-C B-C Y248 Y27 Y248 Y27 Hydrophobic Hydrophobic 0.69 View
B-C B-C Y248 W96 Y248 W96 Hydrophobic Hydrophobic 1.38 View
B-C B-C P251 Y102 P251 Y102 Hydrophobic Hydrophobic 1.9 View
B-C B-C Y248 W96 Y248 W96 Hydrophobic Hydrophobic 1.63 View
B-C B-C Y248 W96 Y248 W96 Hydrophobic Hydrophobic 0.89 View
B-C B-C Y144 I30 Y144 I30 Hydrophobic Hydrophobic 0.7 View
B-C B-C L249 Y27 L249 Y27 Hydrogen Bonds Hydrogen Bonds 1.16 View
B-C B-C Y248 W96 Y248 W96 Hydrophobic Hydrophobic 1.63 View
B-C B-C W152 Y98 W152 Y98 Hydrophobic Hydrophobic 0.73 View
B-C B-C Y248 W96 Y248 W96 Aromatic Stacking Hydrophobic 1.09 View
B-C B-C K147 E71 K147 E71 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 1.06 View
B-C B-C Y248 Y27 Y248 Y27 Hydrophobic Hydrophobic 0.94 View
B-C B-C K147 F51 K147 F51 Hydrophobic Hydrophobic 0.7 View
B-C B-C K150 V55 K150 V55 Hydrophobic Hydrophobic 0.22 View
B-C B-C Y145 A97 Y145 A97 Hydrophobic Hydrophobic 0.7 View
B-C B-C Y248 W96 Y248 W96 Hydrophobic Hydrophobic 1.73 View
B-C B-C Y145 Y98 Y145 Y98 Hydrophobic Hydrophobic 1.07 View
B-C B-C T250 Q1 T250 Q1 Hydrogen Bonds Hydrogen Bonds 1.35 View
B-C B-C K147 L29 K147 L29 Hydrogen Bonds Hydrogen Bonds 1.03 View
B-C B-C Y248 W96 Y248 W96 Hydrophobic Hydrophobic 1.37 View
B-C B-C Y144 I30 Y144 I30 Hydrophobic Hydrophobic 0.68 View
B-C B-C K147 F51 K147 F51 Hydrophobic Hydrophobic 0.56 View
B-C B-C Y145 Y98 Y145 Y98 Aromatic Stacking Aromatic Stacking 1.09 View
B-C B-C Y248 Y27 Y248 Y27 Hydrophobic Hydrophobic 0.74 View
B-C B-C Y248 W96 Y248 W96 Hydrophobic Hydrophobic 1.14 View
B-C B-C P251 Y102 P251 Y102 Hydrophobic Hydrophobic 1.32 View
B-C B-C Y248 Y27 Y248 Y27 Aromatic Stacking Aromatic Stacking 0.84 View
B-C B-C Y145 A97 Y145 A97 Hydrophobic Hydrophobic 0.67 View
B-C B-C Y248 Y27 Y248 Y27 Hydrophobic Hydrophobic 0.99 View
B-C B-C W152 Y98 W152 Y98 Hydrophobic Hydrophobic 0.95 View
B-C B-C K147 F51 K147 F51 Hydrophobic Hydrophobic 0.76 View
B-C B-C Y248 W96 Y248 W96 Hydrophobic Hydrophobic 1.02 View
B-C B-C R158 E31 R158 E31 Attractive Attractive 0.72 View
B-C B-C L249 W96 T250 W96 Hydrogen Bonds Hydrogen Bonds 1.38 View
B-C B-C K150 D54 K150 D54 Attractive Attractive 1.16 View
B-C B-C W152 Y98 W152 Y98 Hydrophobic Hydrophobic 1.33 View
B-C B-C K147 A97 K147 A97 Hydrophobic Hydrophobic 0.47 View
B-C B-C Y248 W96 Y248 W96 Hydrophobic Hydrophobic 1.34 View
B-C B-C K147 F51 K147 F51 Hydrophobic Hydrophobic 0.5 View
B-C B-C K147 F51 K147 F51 Hydrophobic Hydrophobic 0.61 View
B-C B-C Y248 Y27 Y248 Y27 Hydrophobic Hydrophobic 1.23 View
B-C B-C K147 I30 K147 I30 Hydrophobic Hydrophobic 0.5 View
B-C B-C W152 Y98 W152 Y98 Hydrophobic Hydrophobic 0.48 View
B-C B-C Y248 E31 Y248 E31 Hydrophobic Hydrophobic 0.56 View
B-C B-C Y248 W96 Y248 W96 Hydrophobic Hydrophobic 0.97 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7L2C | 7L2C_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7L2C B-C K150 E53 Attractive 4.63 View
7L2C B-C K150 E53 Attractive 5.74 View
7L2C B-C W152 Y98 Hydrophobic 4.01 View
7L2C B-C R246 G26 Hydrogen Bonds 3.16 View
7L2C B-C R246 Y27 Hydrophobic 4.06 View
7L2C B-C R246 E31 Attractive 4.77 View
7L2C B-C R246 E31 Attractive 4.39 View
7L2C B-C R246 E31 Attractive 5.58 View
7L2C B-C R246 E31 Attractive 5.54 View
7L2C B-C R246 E31 Attractive 5.51 View
7L2C B-C R246 E31 Attractive 5.78 View
7L2C B-C S247 Y27 Hydrogen Bonds 2.69 View
7L2C B-C Y248 W96 Hydrophobic 4.15 View
7L2C B-C Y248 W96 Hydrophobic 3.94 View
7L2C B-C Y248 W96 Hydrophobic 4.05 View
7L2C_africa_mut B-C Y144 I30 Hydrophobic 4.44 View
7L2C_africa_mut B-C K150 D54 Attractive, Hydrogen Bonds 4.20 View
7L2C_africa_mut B-C Y248 W96 Aromatic Stacking 5.93 View
7L2C_africa_mut B-C Y248 W96 Hydrophobic 4.17 View
7L2C_africa_mut B-C L249 W96 Hydrogen Bonds 2.57 View
7L2C_africa_mut B-C L249 K99 Hydrogen Bonds 2.96 View
7L2C_africa_mut B-C T250 K99 Hydrophobic 4.43 View
7L2C_africa_mut B-C P251 Y102 Hydrophobic 4.35 View
7L2C_africa_mut B-C P251 Y102 Hydrophobic 3.85 View
7L2C_africa_mut B-C D253 K99 Attractive 5.95 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph