VTR

14 main matches found (30 matches in total )

Execution time: 53.0 seconds

Match RMSD = 0.56

VTR = 0.01

Average AVD = 0.52 Å

Parameters

Chains(7KXK.pdb ): B versus M

Chains(7KXK_africa_mut.pdb ) B versus M

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7KXK 4383 16 9 9 0 1 1 36
B7KXK_africa_mut 4374 16 7 7 0 1 1 32

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
B-M B-M Y505 Y68 Y505 Y68 Hydrogen Bonds Hydrogen Bonds 0.88 View
B-M B-M F486 Y114 F486 Y114 Aromatic Stacking Aromatic Stacking 0.35 View
B-M B-M F486 Y114 F486 Y114 Hydrophobic Hydrophobic 0.54 View
B-M B-M Y505 L67 Y505 L67 Hydrogen Bonds Hydrogen Bonds 1.06 View
B-M B-M R403 D66 R403 D66 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.27 View
B-M B-M F486 Y114 F486 Y114 Hydrophobic Hydrophobic 0.65 View
B-M B-M F486 Y114 F486 Y114 Hydrophobic Hydrophobic 0.5 View
B-M B-M F486 Y114 F486 Y114 Hydrophobic Hydrophobic 0.48 View
B-M B-M F486 Y114 F486 Y114 Hydrophobic Hydrophobic 0.42 View
B-M B-M F486 Y114 F486 Y114 Hydrophobic Hydrophobic 0.66 View
B-M B-M R403 D66 R403 D66 Attractive Attractive 0.27 View
B-M B-M F486 Y114 F486 Y114 Hydrophobic Hydrophobic 0.7 View
B-M B-M F486 Y114 F486 Y114 Hydrophobic Hydrophobic 0.33 View
B-M B-M F486 Y114 F486 Y114 Hydrophobic Hydrophobic 0.53 View
B-M B-M R403 D66 R403 D66 Attractive Attractive 0.33 View
B-M B-M F486 Y114 F486 Y114 Hydrophobic Hydrophobic 0.52 View
B-M B-M R403 D66 R403 D66 Attractive Attractive 0.28 View
B-M B-M R403 D66 R403 D66 Attractive Attractive 0.28 View
B-M B-M F486 Y114 F486 Y114 Hydrophobic Hydrophobic 0.62 View
B-M B-M F486 Y114 F486 Y114 Hydrophobic Hydrophobic 0.51 View
B-M B-M F486 Y114 F486 Y114 Hydrophobic Hydrophobic 0.52 View
B-M B-M F486 Y114 F486 Y114 Hydrophobic Hydrophobic 0.72 View
B-M B-M R403 D66 R403 D66 Attractive Attractive 0.3 View
B-M B-M R403 L67 R403 L67 Hydrogen Bonds Hydrogen Bonds 0.43 View
B-M B-M Y505 Y68 Y505 Y68 Hydrogen Bonds Hydrogen Bonds 0.82 View
B-M B-M N487 H108 N487 H108 Hydrogen Bonds Hydrogen Bonds 0.8 View
B-M B-M F486 Y114 F486 Y114 Hydrophobic Hydrophobic 0.63 View
B-M B-M R403 D66 R403 D66 Attractive Attractive 0.28 View
B-M B-M E406 D66 E406 D66 Repulsive Repulsive 0.48 View
B-M B-M F486 Y114 F486 Y114 Hydrophobic Hydrophobic 0.51 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7KXK | 7KXK_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7KXK B-M K417 D66 Attractive, Hydrogen Bonds 3.64 View
7KXK B-M K417 D66 Attractive, Hydrogen Bonds 2.74 View
7KXK B-M N501 S69 Hydrogen Bonds 3.63 View
7KXK_africa_mut B-M Y505 S69 Hydrogen Bonds 3.03 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph