VTR

5 main matches found (29 matches in total )

Execution time: 52.0 seconds

Match RMSD = 0.55

VTR = 0.02

Average AVD = 0.53 Å

Parameters

Chains(7KXK.pdb ): B versus I

Chains(7KXK_africa_mut.pdb ) B versus I

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7KXK 4383 24 0 2 0 0 3 29
B7KXK_africa_mut 4374 32 0 2 0 0 3 37

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
B-I B-I Y489 Y109 Y489 Y109 Hydrophobic Hydrophobic 0.41 View
B-I B-I Y489 Y109 Y489 Y109 Hydrophobic Hydrophobic 0.43 View
B-I B-I F486 Y110 F486 Y110 Hydrophobic Hydrophobic 0.33 View
B-I B-I L492 Y109 L492 Y109 Hydrogen Bonds Hydrogen Bonds 0.6 View
B-I B-I Y489 Y109 Y489 Y109 Aromatic Stacking Aromatic Stacking 0.59 View
B-I B-I Y489 Y109 Y489 Y109 Hydrophobic Hydrophobic 0.45 View
B-I B-I E484 Y110 K484 Y110 Hydrophobic Hydrophobic 0.7 View
B-I B-I Y489 Y109 Y489 Y109 Hydrophobic Hydrophobic 0.69 View
B-I B-I F456 F113 F456 F113 Aromatic Stacking Aromatic Stacking 0.47 View
B-I B-I Y489 Y109 Y489 Y109 Hydrophobic Hydrophobic 0.78 View
B-I B-I L455 F113 L455 F113 Hydrophobic Hydrophobic 0.55 View
B-I B-I Y489 F113 Y489 F113 Hydrophobic Hydrophobic 0.4 View
B-I B-I Y489 Y109 Y489 Y109 Hydrophobic Hydrophobic 0.45 View
B-I B-I L455 F113 L455 F113 Hydrophobic Hydrophobic 0.56 View
B-I B-I Y489 F113 Y489 F113 Hydrophobic Hydrophobic 0.38 View
B-I B-I Y489 Y109 Y489 Y109 Hydrophobic Hydrophobic 0.47 View
B-I B-I Y489 Y109 Y489 Y109 Hydrophobic Hydrophobic 0.47 View
B-I B-I F456 F113 F456 F113 Hydrophobic Hydrophobic 0.34 View
B-I B-I F456 F113 F456 F113 Hydrophobic Hydrophobic 0.36 View
B-I B-I Y489 Y109 Y489 Y109 Hydrophobic Hydrophobic 0.49 View
B-I B-I Y489 F113 Y489 F113 Hydrophobic Hydrophobic 0.38 View
B-I B-I F490 Y109 F490 Y109 Hydrogen Bonds Hydrogen Bonds 0.77 View
B-I B-I E484 Y110 K484 Y110 Hydrophobic Hydrophobic 0.72 View
B-I B-I Y489 F113 Y489 F113 Hydrophobic Hydrophobic 0.36 View
B-I B-I Y489 F113 Y489 F113 Aromatic Stacking Aromatic Stacking 0.39 View
B-I B-I F490 Y109 F490 Y109 Hydrophobic Hydrophobic 0.81 View
B-I B-I Y489 Y109 Y489 Y109 Hydrophobic Hydrophobic 0.8 View
B-I B-I F456 F113 F456 F113 Hydrophobic Hydrophobic 0.55 View
B-I B-I Y489 Y109 Y489 Y109 Hydrophobic Hydrophobic 0.71 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7KXK | 7KXK_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7KXK_africa_mut B-I L455 F113 Hydrophobic 4.49 View
7KXK_africa_mut B-I L455 F113 Hydrophobic 4.41 View
7KXK_africa_mut B-I K484 Y109 Hydrophobic 4.46 View
7KXK_africa_mut B-I K484 Y109 Hydrophobic 3.73 View
7KXK_africa_mut B-I K484 Y109 Hydrophobic 4.12 View
7KXK_africa_mut B-I K484 Y110 Hydrophobic 4.11 View
7KXK_africa_mut B-I K484 Y110 Hydrophobic 4.12 View
7KXK_africa_mut B-I F486 Y110 Hydrophobic 4.44 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph