VTR

25 main matches found (33 matches in total )

Execution time: 55.0 seconds

Match RMSD = 0.44

VTR = 0.01

Average AVD = 0.42 Å

Parameters

Chains(7KXJ.pdb ): B versus M

Chains(7KXJ_africa_mut.pdb ) B versus M

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7KXJ 4389 8 8 17 0 1 3 37
B7KXJ_africa_mut 4380 11 8 20 0 4 3 46

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
B-M B-M Y473 H108 Y473 H108 Aromatic Stacking Aromatic Stacking 0.28 View
B-M B-M F486 Y114 F486 Y114 Aromatic Stacking Aromatic Stacking 0.49 View
B-M B-M Y453 D66 Y453 D66 Hydrogen Bonds Hydrogen Bonds 0.54 View
B-M B-M Y453 S56 Y453 S56 Hydrogen Bonds Hydrogen Bonds 0.64 View
B-M B-M F486 Y114 F486 Y114 Hydrophobic Hydrophobic 0.41 View
B-M B-M F486 Y114 F486 Y114 Hydrophobic Hydrophobic 0.29 View
B-M B-M F486 Y114 F486 Y114 Hydrophobic Hydrophobic 0.34 View
B-M B-M A475 T109 A475 T109 Hydrogen Bonds Hydrogen Bonds 0.33 View
B-M B-M R403 D66 R403 D66 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.38 View
B-M B-M R403 D66 R403 D66 Attractive Attractive 0.3 View
B-M B-M R403 D66 R403 D66 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.34 View
B-M B-M Y473 H108 Y473 H108 Hydrogen Bonds Hydrogen Bonds 0.31 View
B-M B-M R403 D66 R403 D66 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.27 View
B-M B-M L455 S36 L455 S36 Hydrogen Bonds Hydrogen Bonds 0.43 View
B-M B-M Y505 L67 Y505 L67 Hydrogen Bonds Hydrogen Bonds 0.48 View
B-M B-M R403 D66 R403 D66 Attractive Hydrogen Bonds Attractive Hydrogen Bonds 0.31 View
B-M B-M R403 D66 R403 D66 Attractive Attractive 0.34 View
B-M B-M F486 Y114 F486 Y114 Hydrophobic Hydrophobic 0.33 View
B-M B-M F486 Y114 F486 Y114 Hydrophobic Hydrophobic 0.6 View
B-M B-M F486 Y114 F486 Y114 Hydrophobic Hydrophobic 0.6 View
B-M B-M N487 Y114 N487 Y114 Hydrogen Bonds Hydrogen Bonds 0.5 View
B-M B-M F486 Y114 F486 Y114 Hydrophobic Hydrophobic 0.48 View
B-M B-M F456 H108 F456 H108 Aromatic Stacking Aromatic Stacking 0.52 View
B-M B-M E406 D66 E406 D66 Repulsive Repulsive 0.65 View
B-M B-M K417 S65 N417 S65 Hydrogen Bonds Hydrogen Bonds 0.33 View
B-M B-M R403 D66 R403 D66 Attractive Attractive 0.3 View
B-M B-M Q409 S65 Q409 S65 Hydrogen Bonds Hydrogen Bonds 0.38 View
B-M B-M R403 D66 R403 D66 Attractive Attractive 0.33 View
B-M B-M Q409 S65 Q409 S65 Hydrogen Bonds Hydrogen Bonds 0.33 View
B-M B-M F486 Y114 F486 Y114 Hydrophobic Hydrophobic 0.41 View
B-M B-M Y505 S69 Y505 S69 Hydrogen Bonds Hydrogen Bonds 0.53 View
B-M B-M Q409 S65 Q409 S65 Hydrogen Bonds Hydrogen Bonds 0.66 View
B-M B-M Y421 R80 Y421 R80 Hydrogen Bonds Hydrogen Bonds 0.52 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7KXJ | 7KXJ_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7KXJ_africa_mut B-M D405 D66 Repulsive 4.91 View
7KXJ_africa_mut B-M N417 S37 Hydrogen Bonds 2.58 View
7KXJ_africa_mut B-M F456 H108 Hydrophobic 4.18 View
7KXJ_africa_mut B-M R457 S36 Hydrogen Bonds 3.63 View
7KXJ_africa_mut B-M R457 R80 Repulsive 5.41 View
7KXJ_africa_mut B-M R457 R80 Repulsive 5.97 View
7KXJ_africa_mut B-M F486 Y114 Hydrophobic 4.29 View
7KXJ_africa_mut B-M F486 Y114 Hydrophobic 4.45 View
7KXJ_africa_mut B-M Y501 S69 Hydrogen Bonds 2.65 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph