VTR

6 main matches found (9 matches in total )

Execution time: 11.0 seconds

Match RMSD = 0.61

VTR = 0.03

Average AVD = 0.55 Å

Parameters

Chains(7KN6.pdb ): A versus L

Chains(7KN6_africa_mut.pdb ) A versus L

Cutoff: 2 Å

Detection of structural contacts in α-helices OFF

Contacts found Number of residues Hydrophobic Attractive Hydrogen Bonds Disulphide Bonds Repulsive Aromatic Stacking Total
A7KN6 721 3 0 7 0 0 0 10
B7KN6_africa_mut 721 4 0 8 0 0 0 12

Matches

(Conservatives hydrophobic matches are hidden by default)

Chains Residues Contact types
A B A1 A2 B1 B2 A [1-2] B [1-2] AVD Contact
A-L A-L Y505 G92 Y505 G92 Hydrogen Bonds Hydrogen Bonds 0.78 View
A-L A-L R403 G92 R403 G92 Hydrogen Bonds Hydrogen Bonds 1.05 View
A-L A-L Y505 Y32 Y505 Y32 Hydrophobic Hydrophobic 0.33 View
A-L A-L Y505 Y32 Y505 Y32 Hydrophobic Hydrophobic 0.33 View
A-L A-L Y505 S93 Y505 S93 Hydrogen Bonds Hydrogen Bonds 0.47 View
A-L A-L G496 Y32 G496 Y32 Hydrogen Bonds Hydrogen Bonds 0.24 View
A-L A-L R403 G92 R403 G92 Hydrogen Bonds Hydrogen Bonds 0.79 View
A-L A-L Y505 Y32 Y505 Y32 Hydrophobic Hydrophobic 0.34 View
A-L A-L Y505 S28 Y505 S28 Hydrogen Bonds Hydrogen Bonds 0.58 View

Colorscheme: Purple/Yellow | Cyan/Green

Contacts: 7KN6 | 7KN6_africa_mut | All matches | Unmatched
Download Pymol files

Unmatched Contacts

Protein Chains Residue1 Residue2 Contact types Distance Contact
7KN6 A-L N501 S28 Hydrogen Bonds 3.38 View
7KN6_africa_mut A-L Y501 Q27 Hydrophobic 3.76 View
7KN6_africa_mut A-L Y501 Q27 Hydrogen Bonds 2.63 View
7KN6_africa_mut A-L Y505 V29 Hydrogen Bonds 3.88 View

Contact Maps

AVD Frequency

Detailed Graphs

Residue Match Frequency View
GLU
ALA
TYR
THR
LEU
SER
PHE
GLY
MET
PRO
LYS
VAL
HIS
ILE
CYS
ARG
GLN
ASP
ASN
TRP

Graph